|
|
@@ -114,7 +114,7 @@ CALDER_sub_domains(intermediate_data_file,
|
|
|
| Parameters | Description
|
|
|
| --------------------- | ----------------------- |
|
|
|
| **contact_tab_straw** |
|
|
|
-| **ref_genome** | One of 'hg19', 'hg38', 'mm9', '10', or NULL.
|
|
|
+| **ref_genome** | One of 'hg19', 'hg38', 'mm9', 'mm10', or 'others' by default.
|
|
|
| **select** | Selection of best PC for downstream analysis [Must be after cis or trans step]
|
|
|
| **analyze** | Perform differential analysis on selected PC's [Must be after select step]
|
|
|
| **subcomp** | Optional: Assigning sub-compartments based on PC magnitude values using HMM segmentation
|
Yuanlong LIU