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@@ -160,7 +160,6 @@ CALDER(contact_tab_dump=contact_tab_dump,
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chrs = c(21:22)
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hic_file = 'HMEC_combined_30.hic' ## can be downloaded from https://ftp.ncbi.nlm.nih.gov/geo/series/GSE63nnn/GSE63525/suppl/GSE63525_HMEC_combined_30.hic
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-# This will not compute sub-domains, but save the intermediate_data that can be used to compute sub-domains latter on
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CALDER(contact_file_hic=hic_file,
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chrs=chrs,
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bin_size=10E3,
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@@ -183,8 +182,6 @@ contact_file_dump = as.list(system.file("extdata", sprintf("mat_chr%s_10kb_ob.tx
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package='CALDER'))
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names(contact_file_dump) = chrs
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-
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-# This will not compute sub-domains, but save the intermediate_data that can be used to compute sub-domains latter on
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CALDER(contact_file_dump=contact_file_dump,
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chrs=chrs,
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bin_size=10E3,
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Yuanlong LIU