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@@ -186,6 +186,7 @@ library(rtracklayer)
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feature_track_raw = import('ENCFF934YOE.bigWig') ## from ENCODE https://www.encodeproject.org/files/ENCFF934YOE/@@download/ENCFF934YOE.bigWig
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feature_track = data.table::as.data.table(feature_track_raw)[, c(1:3, 6)]
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+## Run CALDER
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chrs = c(21:22)
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contact_file_dump = as.list(system.file("extdata", sprintf("mat_chr%s_10kb_ob.txt.gz", chrs),
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package='CALDER'))
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Yuanlong LIU