Update README.md

README.md

@@ -154,7 +154,24 @@ names(contact_file_dump) = chrs
 # This will not compute sub-domains, but save the intermediate_data that can be used to compute sub-domains latter on
 CALDER(contact_file_dump=contact_file_dump, 
 			chrs=chrs, 
-			bin_size=50E3,
+			bin_size=10E3,
+			ref_genome=NULL,
+			feature_track=feature_track,
+			save_dir=save_dir,
+			save_intermediate_data=FALSE,
+			n_cores=2,
+			sub_domains=FALSE)
+```
+
+### Example two:
+```
+chrs = c(21:22)
+hic_file = 'HMEC_combined_30.hic' ## can be downloaded from https://ftp.ncbi.nlm.nih.gov/geo/series/GSE63nnn/GSE63525/suppl/GSE63525_HMEC_combined_30.hic
+
+# This will not compute sub-domains, but save the intermediate_data that can be used to compute sub-domains latter on
+CALDER(contact_file_hic=hic_file, 
+			chrs=chrs, 
+			bin_size=10E3,
 			ref_genome=NULL,
 			feature_track=feature_track,
 			save_dir=save_dir,