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@@ -290,7 +290,6 @@ save_dir/
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| Name | Description |
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| --------------------- | ----------------------- |
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| **chrxx_domain_hierachy.tsv** | information of compartment domain and their hierarchical organization. The hierarchical structure is fully represented by `compartment_label`, for example, `B.2.2.2` and `B.2.2.1` are two sub-branches of `B.2.2`. The `pos_end` column specifies all compartment domain borders, except when it is marked as `gap`, which indicates it is the border of a gap chromsome region that has too few contacts and was excluded from the analysis (e.g., due to low mappability, deletion, technique flaw)
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-| **.tsv** |
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| **chrxx_sub_compartments.bed** | a .bed file containing the sub-compartment information, that can be visualized in IGV. Different colors were used to distinguish compartments (at the resolution of 8 sub-compartments)
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| **chrxx_domain_boundaries.bed** | a .bed file containing the chromatin domains boundaries, that can be visualized in IGV
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| **chrxx_nested_boundaries.bed** | a .bed file containing the nested sub-domain boundaries, that can be visualized in IGV
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@@ -314,4 +313,4 @@ If you use CALDER in your work, please cite: https://www.nature.com/articles/s41
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* Author: Yuanlong LIU
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* Affiliation: Computational Systems Oncology group, Department of Computational Biology, University of Lausanne, Switzerland
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-* Email: yliueagle@googlemail.com
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+* Email: yliueagle@googlemail.com
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Yuanlong LIU