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@@ -11,16 +11,10 @@ CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from w
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* Support input in hic format generated by Juicer tools (https://github.com/aidenlab/juicer)
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* Support input in hic format generated by Juicer tools (https://github.com/aidenlab/juicer)
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* Opimized resolution selection
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* Opimized resolution selection
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* Added output in tabular txt format for downstream analysis
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* Added output in tabular txt format for downstream analysis
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-* All chromosome output aggregated into a single file
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-Although compartments can change between different cell conditions, from our large scale analysis we found the overall correlation between two conditions are high. We input compartment of reference dataset. When the computed compartment has low correlation with this reference, it indicates false calling.
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+* Aggregated All chromosome output into a single file
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# Installation
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# Installation
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## Make sure all dependencies have been installed:
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## Make sure all dependencies have been installed:
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* R.utils (>= 2.9.0),
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* R.utils (>= 2.9.0),
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Yuanlong LIU