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@@ -13,9 +13,9 @@ CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from w
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* Calder connects chromatin 3D organization to genomic function:
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* Calder connects chromatin 3D organization to genomic function:
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-## (A note on the performance of Calder vs PC)
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+## (A note on the performance of Calder vs PC-based approach)
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-* Except for being able to identify non-linear sub-compartments, Calder demonstrates superior robustness over PC-based approach in identifying meaningful compartments, particularly when faced with complex chromosomal structural variations (figure on the left) and loose interaction between the p and q arms (figure on the right)
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+* The sign of PC1 was typically used to define A/B compartment. We found Calder demonstrates superior robustness over PC-based approach in identifying meaningful compartments, particularly when faced with complex chromosomal structural variations (figure on the left) and loose interaction between the p and q arms (figure on the right)
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