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@@ -111,6 +111,7 @@ CALDER_sub_domains(intermediate_data_file,
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* `save_intermediate_data`: logical. If TRUE, an intermediate_data will be saved. This file can be used for computing nested sub-domains later on
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* `genome`: string. Specifies the genome assembly (Default="hg19").
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| --------------------- | ----------------------- |
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| **contact_tab_straw** |
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| **ref_genome** | One of 'hg19', 'hg38', 'mm9', 'mm10', or 'others' by default.
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Yuanlong LIU