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@@ -283,6 +283,16 @@ save_dir/
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### File description:
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* The `sub_domains` folder stores the final nested boundaries information
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+| Name | Description |
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+| --------------------- | ----------------------- |
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+| **all_sub_compartments.bed** | a .bed file containing the optimal sub-compartment information for all `chrs`, that can be visualized in IGV. Different colors were used to distinguish compartments (at the resolution of 8 sub-compartments)
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+| **all_sub_compartments.tsv** | optimal compartment information stored in tabular text format. Each row represents one 10kb region
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+| **all_sub_compartments.tsv** | optimal compartment information stored in tabular text format. Each row represents one 10kb region
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+| **cor_with_ref.ALL.txt** | correlation of compartment rank with the reference compartment rank for each of `bin_sizes`, and the optimimal `bin_size` that is finally selected
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+| **cor_with_ref.pdf** | correlation of compartment rank with the reference compartment rank using the optimimal `bin_size`
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* The `sub_compartments` folder stores the final compartment information
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* The `intermediate_data` folder stores intermediate information at each of the extended `bin_sizes`
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