Update README.md

README.md

@@ -283,6 +283,16 @@ save_dir/
 ### File description:
 
 * The `sub_domains` folder stores the final nested boundaries information
+| Name              | Description |  
+| --------------------- | ----------------------- |
+| **all_sub_compartments.bed**                | a .bed file containing the optimal sub-compartment information for all `chrs`, that can be visualized in IGV. Different colors were used to distinguish compartments (at the resolution of 8 sub-compartments)
+| **all_sub_compartments.tsv**                | optimal compartment information stored in tabular text format. Each row represents one 10kb region
+| **all_sub_compartments.tsv**                | optimal compartment information stored in tabular text format. Each row represents one 10kb region
+| **cor_with_ref.ALL.txt**                | correlation of compartment rank with the reference compartment rank for each of `bin_sizes`, and the optimimal `bin_size` that is finally selected
+| **cor_with_ref.pdf**                | correlation of compartment rank with the reference compartment rank using the optimimal `bin_size`
+
+
+
 * The `sub_compartments` folder stores the final compartment information
 * The `intermediate_data` folder stores intermediate information at each of the extended `bin_sizes`