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@@ -215,7 +215,7 @@ CALDER(contact_file_dump=contact_file_dump,
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| Name | Description |
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| --------------------- | ----------------------- |
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-| **chrs** | A vector of chromosome names to be analyzed, with or without 'chr'
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+| **chrs** | A vector of chromosome names to be analyzed, with or without 'chr'. Chromosome names should be consistent with those in `contact_file_hic` and `feature_track` if the later are provided
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| **contact_file_dump** |A list of contact files in dump format, named by `chrs`. Each contact file stores the contact information of the corresponding `chr`. Only one of `contact_file_dump`, `contact_tab_dump`, `contact_file_hic` should be provided
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| **contact_tab_dump** | A list of contact table in dump format, named by `chrs`, stored as an R object. Only one of `contact_file_dump`, `contact_tab_dump`, `contact_file_hic` should be provided
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| **contact_file_hic** | A hic file generated by Juicer tools. It should contain all chromosomes in `chrs`. Only one of `contact_file_dump`, `contact_tab_dump`, `contact_file_hic` should be provided
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Yuanlong LIU