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@@ -115,7 +115,7 @@ CALDER_sub_domains(intermediate_data_file,
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| **contact_tab_straw** |
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| **ref_genome** | One of 'hg19', 'hg38', 'mm9', 'mm10', 'others' (default).
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-| **annotation_track** | A genomic annotation track in data.frame or data.table format. This track will be used to define the A/B compartment direction and should be presumably have higher values in A compartment.
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+| **annotation_track** | A genomic annotation track in data.frame or data.table format. This track will be used for determing the A/B compartment direction and should presumably have higher values in A than in B compartment. Some suggested tracks can be:
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| **contact_file_hic** | Path to the hic
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| **chrs** | chromosome names to be analyzed
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| **bin_size** | numeric, the size of a bin in consistent with the contact table
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Yuanlong LIU