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@@ -282,14 +282,14 @@ save_dir/
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### File description:
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-* The `sub_domains` folder stores the final nested boundaries
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+* The `sub_domains` folder stores the nested boundaries
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* The `sub_compartments` folder stores the optimal compartment information, including files:
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| Name | Description |
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| --------------------- | ----------------------- |
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| **all_sub_compartments.bed** | a .bed file containing the optimal compartments for all `chrs`, that can be visualized in IGV. Different colors were used to distinguish compartments (at the resolution of 8 sub-compartments)
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| **all_sub_compartments.tsv** | optimal compartments stored in tabular text format. Each row represents one 10kb region
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-| **cor_with_ref.ALL.txt** | correlation of compartment rank with the reference compartment rank for each of extended `bin_sizes`, and the optimimal `bin_size` that is finally selected
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+| **cor_with_ref.ALL.txt** | a plot of correlation between compartment rank and the reference compartment rank for each of extended `bin_sizes`, and the optimimal `bin_size` that is finally selected
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| **cor_with_ref.pdf** | correlation of compartment rank with the reference compartment rank using the optimimal `bin_size`
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Yuanlong LIU