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@@ -122,6 +122,8 @@ CALDER_sub_domains(intermediate_data_file,
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| **save_dir** | the directory to save outputs
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| **save_intermediate_data** | logical. If TRUE, an intermediate_data will be saved. This file can be used for computing nested sub-domains later on
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| **n_cores** | integer. Number of cores to be registered for running CALDER in parallel
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+| **single_binsize_only** | logical. If TRUE, CALDER will compute compartments only using the bin_size specified by the user and not do bin size optimization
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+| **sub_domains** | logical, whether to compute nested sub-domains
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### Output:
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Yuanlong LIU