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uropa add attribute

zhangxudong 10 months ago
parent
commit
20000d2398
1 changed files with 1 additions and 1 deletions
  1. 1 1
      Snakefile

+ 1 - 1
Snakefile

@@ -511,7 +511,7 @@ rule peak_annotation_with_uropa:
         PEAKSNAKE_HOME + "/sifs/uropa_4.0.3--pyhdfd78af_0.sif"
     shell:
         """
-        uropa --bed {input.Peak} --gtf {input.gtf} --feature {params.feature} --feature-anchor {params.feature_anchor} --distance {params.distance} --relative-location {params.relative_location} --outdir peak_annotation 1>{log} 2>&1 
+        uropa --bed {input.Peak} --gtf {input.gtf} --feature {params.feature} --feature-anchor {params.feature_anchor} --distance {params.distance} --relative-location {params.relative_location} --show-attributes gene_id --outdir peak_annotation 1>{log} 2>&1 
         """
 
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