|
|
@@ -511,7 +511,7 @@ rule peak_annotation_with_uropa:
|
|
|
PEAKSNAKE_HOME + "/sifs/uropa_4.0.3--pyhdfd78af_0.sif"
|
|
|
shell:
|
|
|
"""
|
|
|
- uropa --bed {input.Peak} --gtf {input.gtf} --feature {params.feature} --feature-anchor {params.feature_anchor} --distance {params.distance} --relative-location {params.relative_location} --outdir peak_annotation 1>{log} 2>&1
|
|
|
+ uropa --bed {input.Peak} --gtf {input.gtf} --feature {params.feature} --feature-anchor {params.feature_anchor} --distance {params.distance} --relative-location {params.relative_location} --show-attributes gene_id --outdir peak_annotation 1>{log} 2>&1
|
|
|
"""
|
|
|
|
|
|
##########################################################
|
