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@@ -511,7 +511,7 @@ rule peak_annotation_with_uropa:
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PEAKSNAKE_HOME + "/sifs/uropa_4.0.3--pyhdfd78af_0.sif"
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shell:
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"""
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- uropa --bed {input.Peak} --gtf {input.gtf} --feature {params.feature} --feature-anchor {params.feature_anchor} --distance {params.distance} --relative-location {params.relative_location} --outdir peak_annotation 1>{log} 2>&1
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+ uropa --bed {input.Peak} --gtf {input.gtf} --feature {params.feature} --feature-anchor {params.feature_anchor} --distance {params.distance} --relative-location {params.relative_location} --show-attributes gene_id --outdir peak_annotation 1>{log} 2>&1
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"""
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##########################################################
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