localrules: makeOrgDB
######################################################
# Annotation with eggnog-mapper
######################################################
Annotation_Dir = config["Annotation_Dir"]

rule makeOrgDB:
    input:
        emapper = config["emapper"],
        proteins = config["proteins"]
    output:
        Annotation_Dir + "/anno_stat.txt"
    shell:
        "cd {Annotation_Dir} ;"
        "Rscript ../tools/emcp/emapperx.R ../{input.emapper} ../{input.proteins} ;"
        "cd ..;"