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- localrules: makeOrgDB
- ######################################################
- # Annotation with eggnog-mapper
- ######################################################
- Annotation_Dir = config["Annotation_Dir"]
- rule makeOrgDB:
- input:
- emapper = config["emapper"],
- proteins = config["proteins"]
- output:
- Annotation_Dir + "/anno_stat.txt"
- shell:
- "cd {Annotation_Dir} ;"
- "Rscript ../tools/emcp/emapperx.R ../{input.emapper} ../{input.proteins} ;"
- "cd ..;"
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