Zhang Xudong 2 лет назад
Родитель
Сommit
c48df7e917
39 измененных файлов с 0 добавлено и 335398 удалено
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      example_data/R_Library/org.My.eg.db/DESCRIPTION
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      example_data/R_Library/org.My.eg.db/INDEX
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      example_data/R_Library/org.My.eg.db/NAMESPACE
  10. 0 27
      example_data/R_Library/org.My.eg.db/R/org.My.eg.db
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      example_data/R_Library/org.My.eg.db/R/org.My.eg.db.rdb
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      example_data/R_Library/org.My.eg.db/R/org.My.eg.db.rdx
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      example_data/R_Library/org.My.eg.db/extdata/org.My.eg.sqlite
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      example_data/R_Library/org.My.eg.db/help/AnIndex
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      example_data/R_Library/org.My.eg.db/help/aliases.rds
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      example_data/R_Library/org.My.eg.db/help/org.My.eg.db.rdb
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      example_data/R_Library/org.My.eg.db/help/org.My.eg.db.rdx
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      example_data/R_Library/org.My.eg.db/html/00Index.html
  20. 0 97
      example_data/R_Library/org.My.eg.db/html/R.css
  21. 0 253760
      example_data/Sind.pep.fasta
  22. 0 5
      example_data/anno_stat.txt
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      example_data/cog.pdf
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      example_data/cog.txt
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      example_data/go.pdf
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      example_data/go.txt
  27. 0 22848
      example_data/my.emapper.annotations
  28. 0 14
      example_data/org.My.eg.db/DESCRIPTION
  29. 0 16
      example_data/org.My.eg.db/NAMESPACE
  30. 0 36
      example_data/org.My.eg.db/R/zzz.R
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      example_data/org.My.eg.db/inst/extdata/org.My.eg.sqlite
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      example_data/org.My.eg.db/man/org.My.egBASE.Rd
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      example_data/org.My.eg.db/man/org.My.egORGANISM.Rd
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      example_data/org.My.eg.db/man/org.My.eg_dbconn.Rd
  35. BIN
      example_data/org.My.eg.db_1.0.tar.gz
  36. BIN
      example_data/pathway.pdf
  37. 0 29258
      example_data/pathway.txt
  38. 0 438
      example_data/pathway_name.txt
  39. 0 46
      example_data/pathway_stat.txt

+ 0 - 16
example_data/R_Library/org.My.eg.db/DESCRIPTION

@@ -1,16 +0,0 @@
-Package: org.My.eg.db
-Title: Genome wide annotation for M y
-Description: Genome wide annotation for M y, primarily based on mapping using Entrez Gene identifiers.
-Version: 1.0
-Author: zhangsan
-Maintainer: zhangsan <zhangsan@genek.cn>
-Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.52.0)
-Suggests: DBI, annotate, RUnit
-Imports: methods, AnnotationDbi
-License: Artistic-2.0
-organism: M y
-species: M y
-biocViews: OrgDb, annotation
-NeedsCompilation: no
-Packaged: 2021-12-28 06:53:59 UTC; zhxd2
-Built: R 4.0.5; ; 2021-12-28 06:56:34 UTC; unix

+ 0 - 4
example_data/R_Library/org.My.eg.db/INDEX

@@ -1,4 +0,0 @@
-org.My.eg.db            Bioconductor annotation data package
-org.My.egORGANISM       The Organism for org.My.eg
-org.My.eg_dbconn        Collect information about the package
-                        annotation DB

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example_data/R_Library/org.My.eg.db/Meta/Rd.rds


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example_data/R_Library/org.My.eg.db/Meta/features.rds


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example_data/R_Library/org.My.eg.db/Meta/hsearch.rds


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example_data/R_Library/org.My.eg.db/Meta/links.rds


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example_data/R_Library/org.My.eg.db/Meta/nsInfo.rds


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example_data/R_Library/org.My.eg.db/Meta/package.rds


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example_data/R_Library/org.My.eg.db/NAMESPACE

@@ -1,16 +0,0 @@
-import(methods)
-import(AnnotationDbi)
-
-### Only put what is statically exported here. All the AnnObj instances
-### created at load time are dynamically exported (refer to R/zzz.R for
-### the details).
-export(
-    org.My.eg,
-    org.My.eg_dbconn,
-    org.My.eg_dbfile,
-    org.My.eg_dbschema,
-    org.My.eg_dbInfo,
-
-    org.My.egORGANISM
-)
-

+ 0 - 27
example_data/R_Library/org.My.eg.db/R/org.My.eg.db

@@ -1,27 +0,0 @@
-#  File share/R/nspackloader.R
-#  Part of the R package, https://www.R-project.org
-#
-#  Copyright (C) 1995-2012 The R Core Team
-#
-#  This program is free software; you can redistribute it and/or modify
-#  it under the terms of the GNU General Public License as published by
-#  the Free Software Foundation; either version 2 of the License, or
-#  (at your option) any later version.
-#
-#  This program is distributed in the hope that it will be useful,
-#  but WITHOUT ANY WARRANTY; without even the implied warranty of
-#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-#  GNU General Public License for more details.
-#
-#  A copy of the GNU General Public License is available at
-#  https://www.r-project.org/Licenses/
-
-local({
-    info <- loadingNamespaceInfo()
-    pkg <- info$pkgname
-    ns <- .getNamespace(as.name(pkg))
-    if (is.null(ns))
-        stop("cannot find namespace environment for ", pkg, domain = NA);
-    dbbase <- file.path(info$libname, pkg, "R", pkg)
-    lazyLoad(dbbase, ns, filter = function(n) n != ".__NAMESPACE__.")
-})

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example_data/R_Library/org.My.eg.db/R/org.My.eg.db.rdb


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example_data/R_Library/org.My.eg.db/R/org.My.eg.db.rdx


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example_data/R_Library/org.My.eg.db/extdata/org.My.eg.sqlite


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example_data/R_Library/org.My.eg.db/help/AnIndex

@@ -1,7 +0,0 @@
-org.My.eg	org.My.egBASE
-org.My.eg.db	org.My.egBASE
-org.My.egORGANISM	org.My.egORGANISM
-org.My.eg_dbconn	org.My.eg_dbconn
-org.My.eg_dbfile	org.My.eg_dbconn
-org.My.eg_dbInfo	org.My.eg_dbconn
-org.My.eg_dbschema	org.My.eg_dbconn

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example_data/R_Library/org.My.eg.db/help/aliases.rds


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example_data/R_Library/org.My.eg.db/help/org.My.eg.db.rdb


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example_data/R_Library/org.My.eg.db/help/org.My.eg.db.rdx


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example_data/R_Library/org.My.eg.db/help/paths.rds


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example_data/R_Library/org.My.eg.db/html/00Index.html

@@ -1,38 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-<head><title>R: Genome wide annotation for M y</title>
-<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-<link rel="stylesheet" type="text/css" href="R.css" />
-</head><body>
-<h1> Genome wide annotation for M y
-<img class="toplogo" src="../../../doc/html/Rlogo.svg" alt="[R logo]" />
-</h1>
-<hr/>
-<div style="text-align: center;">
-<a href="../../../doc/html/packages.html"><img class="arrow" src="../../../doc/html/left.jpg" alt="[Up]" /></a>
-<a href="../../../doc/html/index.html"><img class="arrow" src="../../../doc/html/up.jpg" alt="[Top]" /></a>
-</div><h2>Documentation for package &lsquo;org.My.eg.db&rsquo; version 1.0</h2>
-
-<ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li>
-</ul>
-
-<h2>Help Pages</h2>
-
-
-<table width="100%">
-<tr><td style="width: 25%;"><a href="org.My.egBASE.html">org.My.eg</a></td>
-<td>Bioconductor annotation data package</td></tr>
-<tr><td style="width: 25%;"><a href="org.My.egBASE.html">org.My.eg.db</a></td>
-<td>Bioconductor annotation data package</td></tr>
-<tr><td style="width: 25%;"><a href="org.My.egORGANISM.html">org.My.egORGANISM</a></td>
-<td>The Organism for org.My.eg</td></tr>
-<tr><td style="width: 25%;"><a href="org.My.eg_dbconn.html">org.My.eg_dbconn</a></td>
-<td>Collect information about the package annotation DB</td></tr>
-<tr><td style="width: 25%;"><a href="org.My.eg_dbconn.html">org.My.eg_dbfile</a></td>
-<td>Collect information about the package annotation DB</td></tr>
-<tr><td style="width: 25%;"><a href="org.My.eg_dbconn.html">org.My.eg_dbInfo</a></td>
-<td>Collect information about the package annotation DB</td></tr>
-<tr><td style="width: 25%;"><a href="org.My.eg_dbconn.html">org.My.eg_dbschema</a></td>
-<td>Collect information about the package annotation DB</td></tr>
-</table>
-</body></html>

+ 0 - 97
example_data/R_Library/org.My.eg.db/html/R.css

@@ -1,97 +0,0 @@
-body {
-    background: white;
-    color: black;
-}
-
-a:link {
-    background: white;
-    color: blue;
-}
-
-a:visited {
-    background: white;
-    color: rgb(50%, 0%, 50%);
-}
-
-h1 {
-    background: white;
-    color: rgb(55%, 55%, 55%);
-    font-family: monospace;
-    font-size: x-large;
-    text-align: center;
-}
-
-h2 {
-    background: white;
-    color: rgb(40%, 40%, 40%);
-    font-family: monospace;
-    font-size: large;
-    text-align: center;
-}
-
-h3 {
-    background: white;
-    color: rgb(40%, 40%, 40%);
-    font-family: monospace;
-    font-size: large;
-}
-
-h4 {
-    background: white;
-    color: rgb(40%, 40%, 40%);
-    font-family: monospace;
-    font-style: italic;
-    font-size: large;
-}
-
-h5 {
-    background: white;
-    color: rgb(40%, 40%, 40%);
-    font-family: monospace;
-}
-
-h6 {
-    background: white;
-    color: rgb(40%, 40%, 40%);
-    font-family: monospace;
-    font-style: italic;
-}
-		
-img.toplogo {
-    width: 4em;
-    vertical-align: middle;
-}
-
-img.arrow {
-    width: 30px;
-    height: 30px;
-    border: 0;
-}
-
-span.acronym {
-    font-size: small;
-}
-
-span.env {
-    font-family: monospace;
-}
-
-span.file {
-    font-family: monospace;
-}
-
-span.option{
-    font-family: monospace;
-}
-
-span.pkg {
-    font-weight: bold;
-}
-
-span.samp{
-    font-family: monospace;
-}
-
-div.vignettes a:hover {
-    background: rgb(85%, 85%, 85%);
-}

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example_data/Sind.pep.fasta


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example_data/anno_stat.txt

@@ -1,5 +0,0 @@
-database	number	percentage
-EggNOG	27,161	79.71%
-GO	13,634	40.01%
-COG/KOG	27,161	79.71%
-KEGG Pathway	9,183	26.95%

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example_data/cog.pdf


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example_data/cog.txt


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example_data/go.pdf


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example_data/go.txt


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example_data/my.emapper.annotations


+ 0 - 14
example_data/org.My.eg.db/DESCRIPTION

@@ -1,14 +0,0 @@
-Package: org.My.eg.db
-Title: Genome wide annotation for M y
-Description: Genome wide annotation for M y, primarily based on mapping using Entrez Gene identifiers.
-Version: 1.0
-Author: zhangsan
-Maintainer: zhangsan <zhangsan@genek.cn>
-Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.52.0)
-Suggests: DBI, annotate, RUnit
-Imports: methods, AnnotationDbi
-License: Artistic-2.0
-organism: M y
-species: M y
-biocViews: OrgDb, annotation
-

+ 0 - 16
example_data/org.My.eg.db/NAMESPACE

@@ -1,16 +0,0 @@
-import(methods)
-import(AnnotationDbi)
-
-### Only put what is statically exported here. All the AnnObj instances
-### created at load time are dynamically exported (refer to R/zzz.R for
-### the details).
-export(
-    org.My.eg,
-    org.My.eg_dbconn,
-    org.My.eg_dbfile,
-    org.My.eg_dbschema,
-    org.My.eg_dbInfo,
-
-    org.My.egORGANISM
-)
-

+ 0 - 36
example_data/org.My.eg.db/R/zzz.R

@@ -1,36 +0,0 @@
-datacache <- new.env(hash=TRUE, parent=emptyenv())
-
-org.My.eg <- function() showQCData("org.My.eg", datacache)
-org.My.eg_dbconn <- function() dbconn(datacache)
-org.My.eg_dbfile <- function() dbfile(datacache)
-org.My.eg_dbschema <- function(file="", show.indices=FALSE) dbschema(datacache, file=file, show.indices=show.indices)
-org.My.eg_dbInfo <- function() dbInfo(datacache)
-
-org.My.egORGANISM <- "M y"
-
-.onLoad <- function(libname, pkgname)
-{
-    ## Connect to the SQLite DB
-    dbfile <- system.file("extdata", "org.My.eg.sqlite", package=pkgname, lib.loc=libname)
-    assign("dbfile", dbfile, envir=datacache)
-    dbconn <- dbFileConnect(dbfile)
-    assign("dbconn", dbconn, envir=datacache)
-
-    ## Create the OrgDb object
-    sPkgname <- sub(".db$","",pkgname)
-    db <- loadDb(system.file("extdata", paste(sPkgname,
-      ".sqlite",sep=""), package=pkgname, lib.loc=libname),
-                   packageName=pkgname)    
-    dbNewname <- AnnotationDbi:::dbObjectName(pkgname,"OrgDb")
-    ns <- asNamespace(pkgname)
-    assign(dbNewname, db, envir=ns)
-    namespaceExport(ns, dbNewname)
-        
-    packageStartupMessage(AnnotationDbi:::annoStartupMessages("org.My.eg.db"))
-}
-
-.onUnload <- function(libpath)
-{
-    dbFileDisconnect(org.My.eg_dbconn())
-}
-

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example_data/org.My.eg.db/inst/extdata/org.My.eg.sqlite


+ 0 - 18
example_data/org.My.eg.db/man/org.My.egBASE.Rd

@@ -1,18 +0,0 @@
-\name{org.My.eg.db}
-\alias{org.My.eg.db}
-\alias{org.My.eg}
-\title{Bioconductor annotation data package}
-\description{
-
-  Welcome to the org.My.eg.db annotation Package.  This is an
-  organism specific package. The purpose is to provide detailed
-  information about the species abbreviated in the second part of the
-  package name org.My.eg.db. This package is updated biannually.
-
-  To learn more about this package, users are encouraged to learn about
-  the select, columns, keys and keytypes methods.  These are described
-  in a walkthrough on the bioconductor website as well as in the manual
-  pages and vignettes in the AnnotationDbi package.
-}
-\keyword{datasets}
-

+ 0 - 32
example_data/org.My.eg.db/man/org.My.egORGANISM.Rd

@@ -1,32 +0,0 @@
-\name{org.My.egORGANISM}
-\alias{org.My.egORGANISM}
-\title{The Organism for org.My.eg}
-\description{
-  org.My.egORGANISM is an R object that contains a single item: a
-  character string that names the organism for which org.My.eg was built.
-}
-
-\details{
-  Although the package name is suggestive of the organism for which it
-  was built, org.My.egORGANISM provides a simple way to programmatically
-  extract the organism name.
-}
-
-\seealso{
-  \itemize{
-    \item \code{\link[AnnotationDbi]{AnnotationDb-class}} for use of
-          the \code{select()} interface.
-  }
-}
-
-\examples{
-## select() interface:
-## Objects in this package can be accessed using the select() interface
-## from the AnnotationDbi package. See ?select for details.
-
-## Bimap interface:
-org.My.egORGANISM
-}
-
-\keyword{datasets}
-

+ 0 - 87
example_data/org.My.eg.db/man/org.My.eg_dbconn.Rd

@@ -1,87 +0,0 @@
-
-\name{org.My.eg_dbconn}
-
-\alias{org.My.eg_dbconn}
-\alias{org.My.eg_dbfile}
-\alias{org.My.eg_dbschema}
-\alias{org.My.eg_dbInfo}
-
-
-\title{Collect information about the package annotation DB}
-
-\description{
-  Some convenience functions for getting a connection object to (or collecting
-  information about) the package annotation DB.
-}
-
-\usage{
-  org.My.eg_dbconn()
-  org.My.eg_dbfile()
-  org.My.eg_dbschema(file="", show.indices=FALSE)
-  org.My.eg_dbInfo()
-}
-
-\arguments{
-  \item{file}{
-    A connection, or a character string naming the file to print to (see
-    the \code{file} argument of the \code{\link[base]{cat}} function for
-    the details).
-  }
-  \item{show.indices}{
-    The CREATE INDEX statements are not shown by default.
-    Use \code{show.indices=TRUE} to get them.
-  }
-}
-
-\details{
-  \code{org.My.eg_dbconn} returns a connection object to the
-  package annotation DB.  IMPORTANT: Don't call
-  \code{\link[DBI:dbConnect]{dbDisconnect}} on the connection object
-  returned by \code{org.My.eg_dbconn} or you will break all the
-  \code{\link[AnnotationDbi:AnnDbObj-class]{AnnDbObj}} objects defined
-  in this package!
-
-  \code{org.My.eg_dbfile} returns the path (character string) to the
-  package annotation DB (this is an SQLite file).
-
-  \code{org.My.eg_dbschema} prints the schema definition of the
-  package annotation DB.
-
-  \code{org.My.eg_dbInfo} prints other information about the package
-  annotation DB.
-}
-
-\value{
-  \code{org.My.eg_dbconn}: a DBIConnection object representing an
-  open connection to the package annotation DB.
-
-  \code{org.My.eg_dbfile}: a character string with the path to the
-  package annotation DB.
-
-  \code{org.My.eg_dbschema}: none (invisible \code{NULL}).
-
-  \code{org.My.eg_dbInfo}: none (invisible \code{NULL}).
-}
-
-\seealso{
-  \code{\link[DBI:dbSendQuery]{dbGetQuery}},
-  \code{\link[DBI:dbConnect]{dbConnect}},
-  \code{\link[AnnotationDbi:AnnDbObj-class]{dbconn}},
-  \code{\link[AnnotationDbi:AnnDbObj-class]{dbfile}},
-  \code{\link[AnnotationDbi:AnnDbObj-class]{dbschema}},
-  \code{\link[AnnotationDbi:AnnDbObj-class]{dbInfo}}
-}
-
-\examples{
-  library(DBI)
-  ## Count the number of rows in the "genes" table:
-  dbGetQuery(org.My.eg_dbconn(), "SELECT COUNT(*) FROM genes")
-
-  org.My.eg_dbschema()
-
-  org.My.eg_dbInfo()
-}
-
-\keyword{utilities}
-\keyword{datasets}
-

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example_data/org.My.eg.db_1.0.tar.gz


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example_data/pathway.pdf


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example_data/pathway.txt


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example_data/pathway_name.txt

@@ -1,438 +0,0 @@
-Pathway	Pathway_Name	Pathway_Class	Pathway_Subclass
-1	ko00010	Glycolysis / Gluconeogenesis	Metabolism	Carbohydrate metabolism
-2	ko00020	Citrate cycle (TCA cycle)	Metabolism	Carbohydrate metabolism
-3	ko00030	Pentose phosphate pathway	Metabolism	Carbohydrate metabolism
-4	ko00040	Pentose and glucuronate interconversions	Metabolism	Carbohydrate metabolism
-5	ko00051	Fructose and mannose metabolism	Metabolism	Carbohydrate metabolism
-6	ko00052	Galactose metabolism	Metabolism	Carbohydrate metabolism
-7	ko00053	Ascorbate and aldarate metabolism	Metabolism	Carbohydrate metabolism
-8	ko00500	Starch and sucrose metabolism	Metabolism	Carbohydrate metabolism
-9	ko00520	Amino sugar and nucleotide sugar metabolism	Metabolism	Carbohydrate metabolism
-10	ko00620	Pyruvate metabolism	Metabolism	Carbohydrate metabolism
-11	ko00630	Glyoxylate and dicarboxylate metabolism	Metabolism	Carbohydrate metabolism
-12	ko00640	Propanoate metabolism	Metabolism	Carbohydrate metabolism
-13	ko00650	Butanoate metabolism	Metabolism	Carbohydrate metabolism
-14	ko00660	C5-Branched dibasic acid metabolism	Metabolism	Carbohydrate metabolism
-15	ko00562	Inositol phosphate metabolism	Metabolism	Carbohydrate metabolism
-16	ko00190	Oxidative phosphorylation	Metabolism	Energy metabolism
-17	ko00195	Photosynthesis	Metabolism	Energy metabolism
-18	ko00196	Photosynthesis - antenna proteins	Metabolism	Energy metabolism
-19	ko00710	Carbon fixation in photosynthetic organisms	Metabolism	Energy metabolism
-20	ko00720	Carbon fixation pathways in prokaryotes	Metabolism	Energy metabolism
-21	ko00680	Methane metabolism	Metabolism	Energy metabolism
-22	ko00910	Nitrogen metabolism	Metabolism	Energy metabolism
-23	ko00920	Sulfur metabolism	Metabolism	Energy metabolism
-24	ko00061	Fatty acid biosynthesis	Metabolism	Lipid metabolism
-25	ko00062	Fatty acid elongation	Metabolism	Lipid metabolism
-26	ko00071	Fatty acid degradation	Metabolism	Lipid metabolism
-27	ko00072	Synthesis and degradation of ketone bodies	Metabolism	Lipid metabolism
-28	ko00073	Cutin, suberine and wax biosynthesis	Metabolism	Lipid metabolism
-29	ko00100	Steroid biosynthesis	Metabolism	Lipid metabolism
-30	ko00120	Primary bile acid biosynthesis	Metabolism	Lipid metabolism
-31	ko00121	Secondary bile acid biosynthesis	Metabolism	Lipid metabolism
-32	ko00140	Steroid hormone biosynthesis	Metabolism	Lipid metabolism
-33	ko00561	Glycerolipid metabolism	Metabolism	Lipid metabolism
-34	ko00564	Glycerophospholipid metabolism	Metabolism	Lipid metabolism
-35	ko00565	Ether lipid metabolism	Metabolism	Lipid metabolism
-36	ko00600	Sphingolipid metabolism	Metabolism	Lipid metabolism
-37	ko00590	Arachidonic acid metabolism	Metabolism	Lipid metabolism
-38	ko00591	Linoleic acid metabolism	Metabolism	Lipid metabolism
-39	ko00592	alpha-Linolenic acid metabolism	Metabolism	Lipid metabolism
-40	ko01040	Biosynthesis of unsaturated fatty acids	Metabolism	Lipid metabolism
-41	ko00230	Purine metabolism	Metabolism	Nucleotide metabolism
-42	ko00240	Pyrimidine metabolism	Metabolism	Nucleotide metabolism
-43	ko00250	Alanine, aspartate and glutamate metabolism	Metabolism	Amino acid metabolism
-44	ko00260	Glycine, serine and threonine metabolism	Metabolism	Amino acid metabolism
-45	ko00270	Cysteine and methionine metabolism	Metabolism	Amino acid metabolism
-46	ko00280	Valine, leucine and isoleucine degradation	Metabolism	Amino acid metabolism
-47	ko00290	Valine, leucine and isoleucine biosynthesis	Metabolism	Amino acid metabolism
-48	ko00300	Lysine biosynthesis	Metabolism	Amino acid metabolism
-49	ko00310	Lysine degradation	Metabolism	Amino acid metabolism
-50	ko00220	Arginine biosynthesis	Metabolism	Amino acid metabolism
-51	ko00330	Arginine and proline metabolism	Metabolism	Amino acid metabolism
-52	ko00340	Histidine metabolism	Metabolism	Amino acid metabolism
-53	ko00350	Tyrosine metabolism	Metabolism	Amino acid metabolism
-54	ko00360	Phenylalanine metabolism	Metabolism	Amino acid metabolism
-55	ko00380	Tryptophan metabolism	Metabolism	Amino acid metabolism
-56	ko00400	Phenylalanine, tyrosine and tryptophan biosynthesis	Metabolism	Amino acid metabolism
-57	ko00410	beta-Alanine metabolism	Metabolism	Metabolism of other amino acids
-58	ko00430	Taurine and hypotaurine metabolism	Metabolism	Metabolism of other amino acids
-59	ko00440	Phosphonate and phosphinate metabolism	Metabolism	Metabolism of other amino acids
-60	ko00450	Selenocompound metabolism	Metabolism	Metabolism of other amino acids
-61	ko00460	Cyanoamino acid metabolism	Metabolism	Metabolism of other amino acids
-62	ko00471	D-Glutamine and D-glutamate metabolism	Metabolism	Metabolism of other amino acids
-63	ko00472	D-Arginine and D-ornithine metabolism	Metabolism	Metabolism of other amino acids
-64	ko00473	D-Alanine metabolism	Metabolism	Metabolism of other amino acids
-65	ko00480	Glutathione metabolism	Metabolism	Metabolism of other amino acids
-66	ko00510	N-Glycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-67	ko00513	Various types of N-glycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-68	ko00512	Mucin type O-glycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-69	ko00515	Mannose type O-glycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-70	ko00514	Other types of O-glycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-71	ko00532	Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate	Metabolism	Glycan biosynthesis and metabolism
-72	ko00534	Glycosaminoglycan biosynthesis - heparan sulfate / heparin	Metabolism	Glycan biosynthesis and metabolism
-73	ko00533	Glycosaminoglycan biosynthesis - keratan sulfate	Metabolism	Glycan biosynthesis and metabolism
-74	ko00531	Glycosaminoglycan degradation	Metabolism	Glycan biosynthesis and metabolism
-75	ko00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-76	ko00601	Glycosphingolipid biosynthesis - lacto and neolacto series	Metabolism	Glycan biosynthesis and metabolism
-77	ko00603	Glycosphingolipid biosynthesis - globo and isoglobo series	Metabolism	Glycan biosynthesis and metabolism
-78	ko00604	Glycosphingolipid biosynthesis - ganglio series	Metabolism	Glycan biosynthesis and metabolism
-79	ko00540	Lipopolysaccharide biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-80	ko00550	Peptidoglycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-81	ko00511	Other glycan degradation	Metabolism	Glycan biosynthesis and metabolism
-82	ko00571	Lipoarabinomannan (LAM) biosynthesis	Metabolism	Glycan biosynthesis and metabolism
-83	ko00572	Arabinogalactan biosynthesis - Mycobacterium	Metabolism	Glycan biosynthesis and metabolism
-84	ko00730	Thiamine metabolism	Metabolism	Metabolism of cofactors and vitamins
-85	ko00740	Riboflavin metabolism	Metabolism	Metabolism of cofactors and vitamins
-86	ko00750	Vitamin B6 metabolism	Metabolism	Metabolism of cofactors and vitamins
-87	ko00760	Nicotinate and nicotinamide metabolism	Metabolism	Metabolism of cofactors and vitamins
-88	ko00770	Pantothenate and CoA biosynthesis	Metabolism	Metabolism of cofactors and vitamins
-89	ko00780	Biotin metabolism	Metabolism	Metabolism of cofactors and vitamins
-90	ko00785	Lipoic acid metabolism	Metabolism	Metabolism of cofactors and vitamins
-91	ko00790	Folate biosynthesis	Metabolism	Metabolism of cofactors and vitamins
-92	ko00670	One carbon pool by folate	Metabolism	Metabolism of cofactors and vitamins
-93	ko00830	Retinol metabolism	Metabolism	Metabolism of cofactors and vitamins
-94	ko00860	Porphyrin and chlorophyll metabolism	Metabolism	Metabolism of cofactors and vitamins
-95	ko00130	Ubiquinone and other terpenoid-quinone biosynthesis	Metabolism	Metabolism of cofactors and vitamins
-96	ko00900	Terpenoid backbone biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-97	ko00902	Monoterpenoid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-98	ko00909	Sesquiterpenoid and triterpenoid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-99	ko00904	Diterpenoid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-100	ko00906	Carotenoid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-101	ko00905	Brassinosteroid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-102	ko00981	Insect hormone biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-103	ko00908	Zeatin biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-104	ko00903	Limonene and pinene degradation	Metabolism	Metabolism of terpenoids and polyketides
-105	ko00281	Geraniol degradation	Metabolism	Metabolism of terpenoids and polyketides
-106	ko01052	Type I polyketide structures	Metabolism	Metabolism of terpenoids and polyketides
-107	ko00522	Biosynthesis of 12-, 14- and 16-membered macrolides	Metabolism	Metabolism of terpenoids and polyketides
-108	ko01051	Biosynthesis of ansamycins	Metabolism	Metabolism of terpenoids and polyketides
-109	ko01059	Biosynthesis of enediyne antibiotics	Metabolism	Metabolism of terpenoids and polyketides
-110	ko01056	Biosynthesis of type II polyketide backbone	Metabolism	Metabolism of terpenoids and polyketides
-111	ko01057	Biosynthesis of type II polyketide products	Metabolism	Metabolism of terpenoids and polyketides
-112	ko00253	Tetracycline biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-113	ko00523	Polyketide sugar unit biosynthesis	Metabolism	Metabolism of terpenoids and polyketides
-114	ko01054	Nonribosomal peptide structures	Metabolism	Metabolism of terpenoids and polyketides
-115	ko01053	Biosynthesis of siderophore group nonribosomal peptides	Metabolism	Metabolism of terpenoids and polyketides
-116	ko01055	Biosynthesis of vancomycin group antibiotics	Metabolism	Metabolism of terpenoids and polyketides
-117	ko00940	Phenylpropanoid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-118	ko00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-119	ko00941	Flavonoid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-120	ko00944	Flavone and flavonol biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-121	ko00942	Anthocyanin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-122	ko00943	Isoflavonoid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-123	ko00901	Indole alkaloid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-124	ko00403	Indole diterpene alkaloid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-125	ko00950	Isoquinoline alkaloid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-126	ko00960	Tropane, piperidine and pyridine alkaloid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-127	ko01058	Acridone alkaloid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-128	ko00232	Caffeine metabolism	Metabolism	Biosynthesis of other secondary metabolites
-129	ko00965	Betalain biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-130	ko00966	Glucosinolate biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-131	ko00402	Benzoxazinoid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-132	ko00311	Penicillin and cephalosporin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-133	ko00332	Carbapenem biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-134	ko00261	Monobactam biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-135	ko00331	Clavulanic acid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-136	ko00521	Streptomycin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-137	ko00524	Neomycin, kanamycin and gentamicin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-138	ko00525	Acarbose and validamycin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-139	ko00231	Puromycin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-140	ko00401	Novobiocin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-141	ko00404	Staurosporine biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-142	ko00405	Phenazine biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-143	ko00333	Prodigiosin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-144	ko00254	Aflatoxin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites
-145	ko00999	Biosynthesis of secondary metabolites - unclassified	Metabolism	Biosynthesis of other secondary metabolites
-146	ko00362	Benzoate degradation	Metabolism	Xenobiotics biodegradation and metabolism
-147	ko00627	Aminobenzoate degradation	Metabolism	Xenobiotics biodegradation and metabolism
-148	ko00364	Fluorobenzoate degradation	Metabolism	Xenobiotics biodegradation and metabolism
-149	ko00625	Chloroalkane and chloroalkene degradation	Metabolism	Xenobiotics biodegradation and metabolism
-150	ko00361	Chlorocyclohexane and chlorobenzene degradation	Metabolism	Xenobiotics biodegradation and metabolism
-151	ko00623	Toluene degradation	Metabolism	Xenobiotics biodegradation and metabolism
-152	ko00622	Xylene degradation	Metabolism	Xenobiotics biodegradation and metabolism
-153	ko00633	Nitrotoluene degradation	Metabolism	Xenobiotics biodegradation and metabolism
-154	ko00642	Ethylbenzene degradation	Metabolism	Xenobiotics biodegradation and metabolism
-155	ko00643	Styrene degradation	Metabolism	Xenobiotics biodegradation and metabolism
-156	ko00791	Atrazine degradation	Metabolism	Xenobiotics biodegradation and metabolism
-157	ko00930	Caprolactam degradation	Metabolism	Xenobiotics biodegradation and metabolism
-158	ko00363	Bisphenol degradation	Metabolism	Xenobiotics biodegradation and metabolism
-159	ko00621	Dioxin degradation	Metabolism	Xenobiotics biodegradation and metabolism
-160	ko00626	Naphthalene degradation	Metabolism	Xenobiotics biodegradation and metabolism
-161	ko00624	Polycyclic aromatic hydrocarbon degradation	Metabolism	Xenobiotics biodegradation and metabolism
-162	ko00365	Furfural degradation	Metabolism	Xenobiotics biodegradation and metabolism
-163	ko00984	Steroid degradation	Metabolism	Xenobiotics biodegradation and metabolism
-164	ko00980	Metabolism of xenobiotics by cytochrome P450	Metabolism	Xenobiotics biodegradation and metabolism
-165	ko00982	Drug metabolism - cytochrome P450	Metabolism	Xenobiotics biodegradation and metabolism
-166	ko00983	Drug metabolism - other enzymes	Metabolism	Xenobiotics biodegradation and metabolism
-167	ko03020	RNA polymerase	Genetic Information Processing	Transcription
-168	ko03022	Basal transcription factors	Genetic Information Processing	Transcription
-169	ko03040	Spliceosome	Genetic Information Processing	Transcription
-170	ko03010	Ribosome	Genetic Information Processing	Translation
-171	ko00970	Aminoacyl-tRNA biosynthesis	Genetic Information Processing	Translation
-172	ko03013	RNA transport	Genetic Information Processing	Translation
-173	ko03015	mRNA surveillance pathway	Genetic Information Processing	Translation
-174	ko03008	Ribosome biogenesis in eukaryotes	Genetic Information Processing	Translation
-175	ko03060	Protein export	Genetic Information Processing	Folding, sorting and degradation
-176	ko04141	Protein processing in endoplasmic reticulum	Genetic Information Processing	Folding, sorting and degradation
-177	ko04130	SNARE interactions in vesicular transport	Genetic Information Processing	Folding, sorting and degradation
-178	ko04120	Ubiquitin mediated proteolysis	Genetic Information Processing	Folding, sorting and degradation
-179	ko04122	Sulfur relay system	Genetic Information Processing	Folding, sorting and degradation
-180	ko03050	Proteasome	Genetic Information Processing	Folding, sorting and degradation
-181	ko03018	RNA degradation	Genetic Information Processing	Folding, sorting and degradation
-182	ko03030	DNA replication	Genetic Information Processing	Replication and repair
-183	ko03410	Base excision repair	Genetic Information Processing	Replication and repair
-184	ko03420	Nucleotide excision repair	Genetic Information Processing	Replication and repair
-185	ko03430	Mismatch repair	Genetic Information Processing	Replication and repair
-186	ko03440	Homologous recombination	Genetic Information Processing	Replication and repair
-187	ko03450	Non-homologous end-joining	Genetic Information Processing	Replication and repair
-188	ko03460	Fanconi anemia pathway	Genetic Information Processing	Replication and repair
-189	ko02010	ABC transporters	Environmental Information Processing	Membrane transport
-190	ko02060	Phosphotransferase system (PTS)	Environmental Information Processing	Membrane transport
-191	ko03070	Bacterial secretion system	Environmental Information Processing	Membrane transport
-192	ko02020	Two-component system	Environmental Information Processing	Signal transduction
-193	ko04014	Ras signaling pathway	Environmental Information Processing	Signal transduction
-194	ko04015	Rap1 signaling pathway	Environmental Information Processing	Signal transduction
-195	ko04010	MAPK signaling pathway	Environmental Information Processing	Signal transduction
-196	ko04013	MAPK signaling pathway - fly	Environmental Information Processing	Signal transduction
-197	ko04016	MAPK signaling pathway - plant	Environmental Information Processing	Signal transduction
-198	ko04011	MAPK signaling pathway - yeast	Environmental Information Processing	Signal transduction
-199	ko04012	ErbB signaling pathway	Environmental Information Processing	Signal transduction
-200	ko04310	Wnt signaling pathway	Environmental Information Processing	Signal transduction
-201	ko04330	Notch signaling pathway	Environmental Information Processing	Signal transduction
-202	ko04340	Hedgehog signaling pathway	Environmental Information Processing	Signal transduction
-203	ko04341	Hedgehog signaling pathway - fly	Environmental Information Processing	Signal transduction
-204	ko04350	TGF-beta signaling pathway	Environmental Information Processing	Signal transduction
-205	ko04390	Hippo signaling pathway	Environmental Information Processing	Signal transduction
-206	ko04391	Hippo signaling pathway - fly	Environmental Information Processing	Signal transduction
-207	ko04392	Hippo signaling pathway - multiple species	Environmental Information Processing	Signal transduction
-208	ko04370	VEGF signaling pathway	Environmental Information Processing	Signal transduction
-209	ko04371	Apelin signaling pathway	Environmental Information Processing	Signal transduction
-210	ko04630	Jak-STAT signaling pathway	Environmental Information Processing	Signal transduction
-211	ko04064	NF-kappa B signaling pathway	Environmental Information Processing	Signal transduction
-212	ko04668	TNF signaling pathway	Environmental Information Processing	Signal transduction
-213	ko04066	HIF-1 signaling pathway	Environmental Information Processing	Signal transduction
-214	ko04068	FoxO signaling pathway	Environmental Information Processing	Signal transduction
-215	ko04020	Calcium signaling pathway	Environmental Information Processing	Signal transduction
-216	ko04070	Phosphatidylinositol signaling system	Environmental Information Processing	Signal transduction
-217	ko04072	Phospholipase D signaling pathway	Environmental Information Processing	Signal transduction
-218	ko04071	Sphingolipid signaling pathway	Environmental Information Processing	Signal transduction
-219	ko04024	cAMP signaling pathway	Environmental Information Processing	Signal transduction
-220	ko04022	cGMP-PKG signaling pathway	Environmental Information Processing	Signal transduction
-221	ko04151	PI3K-Akt signaling pathway	Environmental Information Processing	Signal transduction
-222	ko04152	AMPK signaling pathway	Environmental Information Processing	Signal transduction
-223	ko04150	mTOR signaling pathway	Environmental Information Processing	Signal transduction
-224	ko04075	Plant hormone signal transduction	Environmental Information Processing	Signal transduction
-225	ko04080	Neuroactive ligand-receptor interaction	Environmental Information Processing	Signaling molecules and interaction
-226	ko04060	Cytokine-cytokine receptor interaction	Environmental Information Processing	Signaling molecules and interaction
-227	ko04512	ECM-receptor interaction	Environmental Information Processing	Signaling molecules and interaction
-228	ko04514	Cell adhesion molecules (CAMs)	Environmental Information Processing	Signaling molecules and interaction
-229	ko04144	Endocytosis	Cellular Processes	Transport and catabolism
-230	ko04145	Phagosome	Cellular Processes	Transport and catabolism
-231	ko04142	Lysosome	Cellular Processes	Transport and catabolism
-232	ko04146	Peroxisome	Cellular Processes	Transport and catabolism
-233	ko04140	Autophagy - animal	Cellular Processes	Transport and catabolism
-234	ko04138	Autophagy - yeast	Cellular Processes	Transport and catabolism
-235	ko04136	Autophagy - other	Cellular Processes	Transport and catabolism
-236	ko04137	Mitophagy - animal	Cellular Processes	Transport and catabolism
-237	ko04139	Mitophagy - yeast	Cellular Processes	Transport and catabolism
-238	ko04110	Cell cycle	Cellular Processes	Cell growth and death
-239	ko04111	Cell cycle - yeast	Cellular Processes	Cell growth and death
-240	ko04112	Cell cycle - Caulobacter	Cellular Processes	Cell growth and death
-241	ko04113	Meiosis - yeast	Cellular Processes	Cell growth and death
-242	ko04114	Oocyte meiosis	Cellular Processes	Cell growth and death
-243	ko04210	Apoptosis	Cellular Processes	Cell growth and death
-244	ko04214	Apoptosis - fly	Cellular Processes	Cell growth and death
-245	ko04215	Apoptosis - multiple species	Cellular Processes	Cell growth and death
-246	ko04216	Ferroptosis	Cellular Processes	Cell growth and death
-247	ko04217	Necroptosis	Cellular Processes	Cell growth and death
-248	ko04115	p53 signaling pathway	Cellular Processes	Cell growth and death
-249	ko04218	Cellular senescence	Cellular Processes	Cell growth and death
-250	ko04510	Focal adhesion	Cellular Processes	Cellular community - eukaryotes
-251	ko04520	Adherens junction	Cellular Processes	Cellular community - eukaryotes
-252	ko04530	Tight junction	Cellular Processes	Cellular community - eukaryotes
-253	ko04540	Gap junction	Cellular Processes	Cellular community - eukaryotes
-254	ko04550	Signaling pathways regulating pluripotency of stem cells	Cellular Processes	Cellular community - eukaryotes
-255	ko02024	Quorum sensing	Cellular Processes	Cellular community - prokaryotes
-256	ko05111	Biofilm formation - Vibrio cholerae	Cellular Processes	Cellular community - prokaryotes
-257	ko02025	Biofilm formation - Pseudomonas aeruginosa	Cellular Processes	Cellular community - prokaryotes
-258	ko02026	Biofilm formation - Escherichia coli	Cellular Processes	Cellular community - prokaryotes
-259	ko02030	Bacterial chemotaxis	Cellular Processes	Cell motility
-260	ko02040	Flagellar assembly	Cellular Processes	Cell motility
-261	ko04810	Regulation of actin cytoskeleton	Cellular Processes	Cell motility
-262	ko04640	Hematopoietic cell lineage	Organismal Systems	Immune system
-263	ko04610	Complement and coagulation cascades	Organismal Systems	Immune system
-264	ko04611	Platelet activation	Organismal Systems	Immune system
-265	ko04620	Toll-like receptor signaling pathway	Organismal Systems	Immune system
-266	ko04624	Toll and Imd signaling pathway	Organismal Systems	Immune system
-267	ko04621	NOD-like receptor signaling pathway	Organismal Systems	Immune system
-268	ko04622	RIG-I-like receptor signaling pathway	Organismal Systems	Immune system
-269	ko04623	Cytosolic DNA-sensing pathway	Organismal Systems	Immune system
-270	ko04625	C-type lectin receptor signaling pathway	Organismal Systems	Immune system
-271	ko04650	Natural killer cell mediated cytotoxicity	Organismal Systems	Immune system
-272	ko04612	Antigen processing and presentation	Organismal Systems	Immune system
-273	ko04660	T cell receptor signaling pathway	Organismal Systems	Immune system
-274	ko04658	Th1 and Th2 cell differentiation	Organismal Systems	Immune system
-275	ko04659	Th17 cell differentiation	Organismal Systems	Immune system
-276	ko04657	IL-17 signaling pathway	Organismal Systems	Immune system
-277	ko04662	B cell receptor signaling pathway	Organismal Systems	Immune system
-278	ko04664	Fc epsilon RI signaling pathway	Organismal Systems	Immune system
-279	ko04666	Fc gamma R-mediated phagocytosis	Organismal Systems	Immune system
-280	ko04670	Leukocyte transendothelial migration	Organismal Systems	Immune system
-281	ko04672	Intestinal immune network for IgA production	Organismal Systems	Immune system
-282	ko04062	Chemokine signaling pathway	Organismal Systems	Immune system
-283	ko04911	Insulin secretion	Organismal Systems	Endocrine system
-284	ko04910	Insulin signaling pathway	Organismal Systems	Endocrine system
-285	ko04922	Glucagon signaling pathway	Organismal Systems	Endocrine system
-286	ko04923	Regulation of lipolysis in adipocytes	Organismal Systems	Endocrine system
-287	ko04920	Adipocytokine signaling pathway	Organismal Systems	Endocrine system
-288	ko03320	PPAR signaling pathway	Organismal Systems	Endocrine system
-289	ko04912	GnRH signaling pathway	Organismal Systems	Endocrine system
-290	ko04913	Ovarian steroidogenesis	Organismal Systems	Endocrine system
-291	ko04915	Estrogen signaling pathway	Organismal Systems	Endocrine system
-292	ko04914	Progesterone-mediated oocyte maturation	Organismal Systems	Endocrine system
-293	ko04917	Prolactin signaling pathway	Organismal Systems	Endocrine system
-294	ko04921	Oxytocin signaling pathway	Organismal Systems	Endocrine system
-295	ko04926	Relaxin signaling pathway	Organismal Systems	Endocrine system
-296	ko04918	Thyroid hormone synthesis	Organismal Systems	Endocrine system
-297	ko04919	Thyroid hormone signaling pathway	Organismal Systems	Endocrine system
-298	ko04928	Parathyroid hormone synthesis, secretion and action	Organismal Systems	Endocrine system
-299	ko04916	Melanogenesis	Organismal Systems	Endocrine system
-300	ko04924	Renin secretion	Organismal Systems	Endocrine system
-301	ko04614	Renin-angiotensin system	Organismal Systems	Endocrine system
-302	ko04925	Aldosterone synthesis and secretion	Organismal Systems	Endocrine system
-303	ko04927	Cortisol synthesis and secretion	Organismal Systems	Endocrine system
-304	ko04260	Cardiac muscle contraction	Organismal Systems	Circulatory system
-305	ko04261	Adrenergic signaling in cardiomyocytes	Organismal Systems	Circulatory system
-306	ko04270	Vascular smooth muscle contraction	Organismal Systems	Circulatory system
-307	ko04970	Salivary secretion	Organismal Systems	Digestive system
-308	ko04971	Gastric acid secretion	Organismal Systems	Digestive system
-309	ko04972	Pancreatic secretion	Organismal Systems	Digestive system
-310	ko04976	Bile secretion	Organismal Systems	Digestive system
-311	ko04973	Carbohydrate digestion and absorption	Organismal Systems	Digestive system
-312	ko04974	Protein digestion and absorption	Organismal Systems	Digestive system
-313	ko04975	Fat digestion and absorption	Organismal Systems	Digestive system
-314	ko04979	Cholesterol metabolism	Organismal Systems	Digestive system
-315	ko04977	Vitamin digestion and absorption	Organismal Systems	Digestive system
-316	ko04978	Mineral absorption	Organismal Systems	Digestive system
-317	ko04962	Vasopressin-regulated water reabsorption	Organismal Systems	Excretory system
-318	ko04960	Aldosterone-regulated sodium reabsorption	Organismal Systems	Excretory system
-319	ko04961	Endocrine and other factor-regulated calcium reabsorption	Organismal Systems	Excretory system
-320	ko04964	Proximal tubule bicarbonate reclamation	Organismal Systems	Excretory system
-321	ko04966	Collecting duct acid secretion	Organismal Systems	Excretory system
-322	ko04724	Glutamatergic synapse	Organismal Systems	Nervous system
-323	ko04727	GABAergic synapse	Organismal Systems	Nervous system
-324	ko04725	Cholinergic synapse	Organismal Systems	Nervous system
-325	ko04728	Dopaminergic synapse	Organismal Systems	Nervous system
-326	ko04726	Serotonergic synapse	Organismal Systems	Nervous system
-327	ko04720	Long-term potentiation	Organismal Systems	Nervous system
-328	ko04730	Long-term depression	Organismal Systems	Nervous system
-329	ko04723	Retrograde endocannabinoid signaling	Organismal Systems	Nervous system
-330	ko04721	Synaptic vesicle cycle	Organismal Systems	Nervous system
-331	ko04722	Neurotrophin signaling pathway	Organismal Systems	Nervous system
-332	ko04744	Phototransduction	Organismal Systems	Sensory system
-333	ko04745	Phototransduction - fly	Organismal Systems	Sensory system
-334	ko04740	Olfactory transduction	Organismal Systems	Sensory system
-335	ko04742	Taste transduction	Organismal Systems	Sensory system
-336	ko04750	Inflammatory mediator regulation of TRP channels	Organismal Systems	Sensory system
-337	ko04320	Dorso-ventral axis formation	Organismal Systems	Development
-338	ko04360	Axon guidance	Organismal Systems	Development
-339	ko04380	Osteoclast differentiation	Organismal Systems	Development
-340	ko04211	Longevity regulating pathway	Organismal Systems	Aging
-341	ko04212	Longevity regulating pathway - worm	Organismal Systems	Aging
-342	ko04213	Longevity regulating pathway - multiple species	Organismal Systems	Aging
-343	ko04710	Circadian rhythm	Organismal Systems	Environmental adaptation
-344	ko04713	Circadian entrainment	Organismal Systems	Environmental adaptation
-345	ko04711	Circadian rhythm - fly	Organismal Systems	Environmental adaptation
-346	ko04712	Circadian rhythm - plant	Organismal Systems	Environmental adaptation
-347	ko04714	Thermogenesis	Organismal Systems	Environmental adaptation
-348	ko04626	Plant-pathogen interaction	Organismal Systems	Environmental adaptation
-349	ko05200	Pathways in cancer	Human Diseases	Cancers: Overview
-350	ko05230	Central carbon metabolism in cancer	Human Diseases	Cancers: Overview
-351	ko05231	Choline metabolism in cancer	Human Diseases	Cancers: Overview
-352	ko05202	Transcriptional misregulation in cancer	Human Diseases	Cancers: Overview
-353	ko05206	MicroRNAs in cancer	Human Diseases	Cancers: Overview
-354	ko05205	Proteoglycans in cancer	Human Diseases	Cancers: Overview
-355	ko05204	Chemical carcinogenesis	Human Diseases	Cancers: Overview
-356	ko05203	Viral carcinogenesis	Human Diseases	Cancers: Overview
-357	ko05210	Colorectal cancer	Human Diseases	Cancers: Specific types
-358	ko05212	Pancreatic cancer	Human Diseases	Cancers: Specific types
-359	ko05225	Hepatocellular carcinoma	Human Diseases	Cancers: Specific types
-360	ko05226	Gastric cancer	Human Diseases	Cancers: Specific types
-361	ko05214	Glioma	Human Diseases	Cancers: Specific types
-362	ko05216	Thyroid cancer	Human Diseases	Cancers: Specific types
-363	ko05221	Acute myeloid leukemia	Human Diseases	Cancers: Specific types
-364	ko05220	Chronic myeloid leukemia	Human Diseases	Cancers: Specific types
-365	ko05217	Basal cell carcinoma	Human Diseases	Cancers: Specific types
-366	ko05218	Melanoma	Human Diseases	Cancers: Specific types
-367	ko05211	Renal cell carcinoma	Human Diseases	Cancers: Specific types
-368	ko05219	Bladder cancer	Human Diseases	Cancers: Specific types
-369	ko05215	Prostate cancer	Human Diseases	Cancers: Specific types
-370	ko05213	Endometrial cancer	Human Diseases	Cancers: Specific types
-371	ko05224	Breast cancer	Human Diseases	Cancers: Specific types
-372	ko05222	Small cell lung cancer	Human Diseases	Cancers: Specific types
-373	ko05223	Non-small cell lung cancer	Human Diseases	Cancers: Specific types
-374	ko05310	Asthma	Human Diseases	Immune diseases
-375	ko05322	Systemic lupus erythematosus	Human Diseases	Immune diseases
-376	ko05323	Rheumatoid arthritis	Human Diseases	Immune diseases
-377	ko05320	Autoimmune thyroid disease	Human Diseases	Immune diseases
-378	ko05321	Inflammatory bowel disease (IBD)	Human Diseases	Immune diseases
-379	ko05330	Allograft rejection	Human Diseases	Immune diseases
-380	ko05332	Graft-versus-host disease	Human Diseases	Immune diseases
-381	ko05340	Primary immunodeficiency	Human Diseases	Immune diseases
-382	ko05010	Alzheimer disease	Human Diseases	Neurodegenerative diseases
-383	ko05012	Parkinson disease	Human Diseases	Neurodegenerative diseases
-384	ko05014	Amyotrophic lateral sclerosis (ALS)	Human Diseases	Neurodegenerative diseases
-385	ko05016	Huntington disease	Human Diseases	Neurodegenerative diseases
-386	ko05020	Prion diseases	Human Diseases	Neurodegenerative diseases
-387	ko05030	Cocaine addiction	Human Diseases	Substance dependence
-388	ko05031	Amphetamine addiction	Human Diseases	Substance dependence
-389	ko05032	Morphine addiction	Human Diseases	Substance dependence
-390	ko05033	Nicotine addiction	Human Diseases	Substance dependence
-391	ko05034	Alcoholism	Human Diseases	Substance dependence
-392	ko05418	Fluid shear stress and atherosclerosis	Human Diseases	Cardiovascular diseases
-393	ko05410	Hypertrophic cardiomyopathy (HCM)	Human Diseases	Cardiovascular diseases
-394	ko05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)	Human Diseases	Cardiovascular diseases
-395	ko05414	Dilated cardiomyopathy (DCM)	Human Diseases	Cardiovascular diseases
-396	ko05416	Viral myocarditis	Human Diseases	Cardiovascular diseases
-397	ko04930	Type II diabetes mellitus	Human Diseases	Endocrine and metabolic diseases
-398	ko04940	Type I diabetes mellitus	Human Diseases	Endocrine and metabolic diseases
-399	ko04950	Maturity onset diabetes of the young	Human Diseases	Endocrine and metabolic diseases
-400	ko04932	Non-alcoholic fatty liver disease (NAFLD)	Human Diseases	Endocrine and metabolic diseases
-401	ko04931	Insulin resistance	Human Diseases	Endocrine and metabolic diseases
-402	ko04933	AGE-RAGE signaling pathway in diabetic complications	Human Diseases	Endocrine and metabolic diseases
-403	ko04934	Cushing syndrome	Human Diseases	Endocrine and metabolic diseases
-404	ko05110	Vibrio cholerae infection	Human Diseases	Infectious diseases: Bacterial
-405	ko05120	Epithelial cell signaling in Helicobacter pylori infection	Human Diseases	Infectious diseases: Bacterial
-406	ko05130	Pathogenic Escherichia coli infection	Human Diseases	Infectious diseases: Bacterial
-407	ko05132	Salmonella infection	Human Diseases	Infectious diseases: Bacterial
-408	ko05131	Shigellosis	Human Diseases	Infectious diseases: Bacterial
-409	ko05133	Pertussis	Human Diseases	Infectious diseases: Bacterial
-410	ko05134	Legionellosis	Human Diseases	Infectious diseases: Bacterial
-411	ko05150	Staphylococcus aureus infection	Human Diseases	Infectious diseases: Bacterial
-412	ko05152	Tuberculosis	Human Diseases	Infectious diseases: Bacterial
-413	ko05100	Bacterial invasion of epithelial cells	Human Diseases	Infectious diseases: Bacterial
-414	ko05166	Human T-cell leukemia virus 1 infection	Human Diseases	Infectious diseases: Viral
-415	ko05170	Human immunodeficiency virus 1 infection	Human Diseases	Infectious diseases: Viral
-416	ko05162	Measles	Human Diseases	Infectious diseases: Viral
-417	ko05164	Influenza A	Human Diseases	Infectious diseases: Viral
-418	ko05161	Hepatitis B	Human Diseases	Infectious diseases: Viral
-419	ko05160	Hepatitis C	Human Diseases	Infectious diseases: Viral
-420	ko05168	Herpes simplex infection	Human Diseases	Infectious diseases: Viral
-421	ko05163	Human cytomegalovirus infection	Human Diseases	Infectious diseases: Viral
-422	ko05167	Kaposi sarcoma-associated herpesvirus infection	Human Diseases	Infectious diseases: Viral
-423	ko05169	Epstein-Barr virus infection	Human Diseases	Infectious diseases: Viral
-424	ko05165	Human papillomavirus infection	Human Diseases	Infectious diseases: Viral
-425	ko05146	Amoebiasis	Human Diseases	Infectious diseases: Parasitic
-426	ko05144	Malaria	Human Diseases	Infectious diseases: Parasitic
-427	ko05145	Toxoplasmosis	Human Diseases	Infectious diseases: Parasitic
-428	ko05140	Leishmaniasis	Human Diseases	Infectious diseases: Parasitic
-429	ko05142	Chagas disease (American trypanosomiasis)	Human Diseases	Infectious diseases: Parasitic
-430	ko05143	African trypanosomiasis	Human Diseases	Infectious diseases: Parasitic
-431	ko01501	beta-Lactam resistance	Human Diseases	Drug resistance: Antimicrobial
-432	ko01502	Vancomycin resistance	Human Diseases	Drug resistance: Antimicrobial
-433	ko01503	Cationic antimicrobial peptide (CAMP) resistance	Human Diseases	Drug resistance: Antimicrobial
-434	ko01521	EGFR tyrosine kinase inhibitor resistance	Human Diseases	Drug resistance: Antineoplastic
-435	ko01524	Platinum drug resistance	Human Diseases	Drug resistance: Antineoplastic
-436	ko01523	Antifolate resistance	Human Diseases	Drug resistance: Antineoplastic
-437	ko01522	Endocrine resistance	Human Diseases	Drug resistance: Antineoplastic

+ 0 - 46
example_data/pathway_stat.txt

@@ -1,46 +0,0 @@
-Pathway_Class	Pathway_Subclass	Count	Percentage
-Cellular Processes	Cell growth and death	643	7.00%
-Cellular Processes	Cell motility	105	1.14%
-Cellular Processes	Cellular community - eukaryotes	203	2.21%
-Cellular Processes	Cellular community - prokaryotes	104	1.13%
-Cellular Processes	Transport and catabolism	853	9.29%
-Environmental Information Processing	Membrane transport	88	0.96%
-Environmental Information Processing	Signal transduction	1836	19.99%
-Environmental Information Processing	Signaling molecules and interaction	1	0.01%
-Genetic Information Processing	Folding, sorting and degradation	752	8.19%
-Genetic Information Processing	Replication and repair	307	3.34%
-Genetic Information Processing	Transcription	407	4.43%
-Genetic Information Processing	Translation	1002	10.91%
-Human Diseases	Cancers: Overview	721	7.85%
-Human Diseases	Cancers: Specific types	236	2.57%
-Human Diseases	Cardiovascular diseases	263	2.86%
-Human Diseases	Drug resistance: Antimicrobial	3	0.03%
-Human Diseases	Drug resistance: Antineoplastic	188	2.05%
-Human Diseases	Endocrine and metabolic diseases	371	4.04%
-Human Diseases	Immune diseases	139	1.51%
-Human Diseases	Infectious diseases: Bacterial	570	6.21%
-Human Diseases	Infectious diseases: Parasitic	326	3.55%
-Human Diseases	Infectious diseases: Viral	836	9.10%
-Human Diseases	Neurodegenerative diseases	423	4.61%
-Human Diseases	Substance dependence	161	1.75%
-Metabolism	Amino acid metabolism	744	8.10%
-Metabolism	Biosynthesis of other secondary metabolites	582	6.34%
-Metabolism	Carbohydrate metabolism	1125	12.25%
-Metabolism	Energy metabolism	831	9.05%
-Metabolism	Glycan biosynthesis and metabolism	163	1.78%
-Metabolism	Lipid metabolism	661	7.20%
-Metabolism	Metabolism of cofactors and vitamins	414	4.51%
-Metabolism	Metabolism of other amino acids	300	3.27%
-Metabolism	Metabolism of terpenoids and polyketides	471	5.13%
-Metabolism	Nucleotide metabolism	317	3.45%
-Metabolism	Xenobiotics biodegradation and metabolism	242	2.64%
-Organismal Systems	Aging	249	2.71%
-Organismal Systems	Circulatory system	134	1.46%
-Organismal Systems	Development	85	0.93%
-Organismal Systems	Digestive system	212	2.31%
-Organismal Systems	Endocrine system	592	6.45%
-Organismal Systems	Environmental adaptation	846	9.21%
-Organismal Systems	Excretory system	118	1.28%
-Organismal Systems	Immune system	629	6.85%
-Organismal Systems	Nervous system	680	7.40%
-Organismal Systems	Sensory system	99	1.08%