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- #!/usr/bin/env python
- def parse(file, store):
- f = open(file, 'r')
- dic = {}
- for i in f:
- i = i.strip("\n")
- val = i.split("\t")
- try:
- dic[val[0]] = dic[val[0]] + ";"+ val[1]+"-"+val[2]
- except KeyError:
- dic[val[0]] = val[1]+"-"+val[2]
- f.close()
- f = open(store, 'w')
- for i in dic.keys():
- string = i+"\t"+dic[i]+"\t0"
- f.write(string+"\n")
- f.close
- if __name__=="__main__":
- import sys
- if len(sys.argv) > 1:
- file = sys.argv[1]
- store = sys.argv[2]
- parse(file, store)
- else:
- sys.exit("No input")
- ####INPUT
- #Eucgr.A00001 GO:0008565 protein transporter activity
- #Eucgr.A00001 GO:0031204 posttranslational protein targeting to membrane, translocation
- #Eucgr.A00004 GO:0005634 nucleus
- #Eucgr.A00006 GO:0003677 DNA binding
- #Eucgr.A00006 GO:0003824 catalytic activity
- #Eucgr.A00012 GO:0015031 protein transport
- #Eucgr.A00012 GO:0006457 protein folding
- #Eucgr.A00014 GO:0003852 2-isopropylmalate synthase activity
- #Eucgr.A00014 GO:0009098 leucine biosynthetic process
- #Eucgr.A00017 GO:0008312 7S RNA binding
- ###OUTPUT
- #Eucgr.L00569 GO:0004672-protein kinase activity;GO:0006468-protein phosphorylation;GO:0005524-ATP binding
- #Eucgr.K00395 GO:0003723-RNA binding
- #Eucgr.A02469 GO:0004672-protein kinase activity;GO:0006468-protein phosphorylation
- #Eucgr.E01168 GO:0005089-Rho guanyl-nucleotide exchange factor activity
- #Eucgr.A02467 GO:0007275-multicellular organismal development;GO:0005634-nucleus;GO:0006511-ubiquitin-dependent protein catabolic process
- #Eucgr.E01166 GO:0016747-transferase activity, transferring acyl groups other than amino-acyl groups
- #Eucgr.A02465 GO:0006950-response to stress;GO:0051087-chaperone binding;GO:0001671-ATPase activator activity
- #Eucgr.A02464 GO:0006662-glycerol ether metabolic process;GO:0045454-cell redox homeostasis;GO:0015035-protein disulfide oxidoreductase activity
- #Eucgr.E01163 GO:0016747-transferase activity, transferring acyl groups other than amino-acyl groups
- #Eucgr.A02462 GO:0005634-nucleus;GO:0006355-regulation of transcription, DNA-templated;GO:0003677-DNA binding;GO:0003700-sequence-specific DNA binding transcription factor activity;GO:004356
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