Analysis/Annotation
===================

The following modules provide support for loading annotation or analysis' into Chado and displaying them on Tripal pages.

Tripal Analysis Expression
--------------------------

A module for loading, annotating, and visualizing NCBI Biomaterials and expression data.

`Documentation <https://github.com/tripal/tripal_analysis_expression/blob/master/README.md>`__
`Repository <https://github.com/tripal/tripal_analysis_expression>`__

Tripal Analysis Blast
---------------------

This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.

`Documentation <https://tripal.readthedocs.io/en/latest/user_guide/example_genomics/func_annots/blast.html>`__
`Repository <https://github.com/tripal/tripal_analysis_blast>`__

Tripal Analysis KEGG
--------------------

This module provides a method for loading of KEGG ortholog assignments derived from the KEGG Automated Annotation Server (KAAS). KEGG assignments appear on each feature page, and a full KEGG report is available for browsing results once uploaded.

`Repository <https://github.com/tripal/tripal_analysis_kegg>`__

Tripal Analysis Interpro
------------------------

This module provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.

`Documentation <https://tripal.readthedocs.io/en/latest/user_guide/example_genomics/func_annots/interpro.html>`__
`Repository <https://github.com/tripal/tripal_analysis_interpro>`__

Tripal CV-Xray
--------------

Tripal CV-Xray maps content annotations onto controlled vocabulary trees.  The end result is a browseable CV field that lets users explore ontologies and find associated content.

`Documentation <https://github.com/statonlab/tripal_cv_xray/blob/master/README.md>`__
`Repository <https://github.com/statonlab/tripal_cv_xray>`__
