<?php

$organism = $variables['node']->organism;
$types = array();

if(property_exists($organism, 'feature_counts')) {
  $types    = $organism->feature_counts['types'];
  $names    = $organism->feature_counts['names'];
} ?>

<div class="tripal_organism-data-block-desc tripal-data-block-desc">The following features are currently present for this organism</div> <?php

// let admins know they can customize the terms that appear in the list
print tripal_set_message("
  Administrators, you can customize the types of terms that appear in this report by navigating to the " .
  l('Tripal feature configuration page', 'admin/tripal/legacy/tripal_feature/configuration', array('attributes' => array('target' => '_blank'))) . "
  opening the section \"Feature Summary Report\" and adding the list of
  terms you want to appear in the list. You can rename terms as well. To refresh the data,re-populate the " .
  l('organism_feature_count', 'admin/tripal/storage/legacy/mviews', array('attributes' => array('target' => '_blank'))) . "
  materialized view.",
  TRIPAL_INFO,
  array('return_html' => 1)
);

// the $headers array is an array of fields to use as the colum headers.
// additional documentation can be found here
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
$headers = array('Feature Type' ,'Count');

// the $rows array contains an array of rows where each row is an array
// of values for each column of the table in that row.  Additional documentation
// can be found here:
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
$rows = array();

for ($j = 0; $j < count($types); $j++) {
  $type = $types[$j];
  $name = $names[$j];

  $rows[] = array(
    "<span title=\"" . $type->definition . "\">$name</span>",
    number_format($type->num_features),
  );
}
// the $table array contains the headers and rows array as well as other
// options for controlling the display of the table.  Additional
// documentation can be found here:
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
$table = array(
  'header' => $headers,
  'rows' => $rows,
  'attributes' => array(
    'id' => 'tripal_organism-table-features',
    'class' => 'tripal-data-table'
  ),
  'sticky' => FALSE,
  'caption' => '',
  'colgroups' => array(),
  'empty' => 'There are no feature counts to report.  If you have loaded features for this
    organism then re-populate the organism_feature_count materialized view.',
);
// once we have our table array structure defined, we call Drupal's theme_table()
// function to generate the table.
print theme_table($table);




