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@@ -97,16 +97,14 @@
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<div id="feature-sequence" class="tripal_feature-info-box">
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<div class="tripal_expandableBox"><h3>Sequence</h3></div>
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<div class="tripal_expandableBoxContent">
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- <?php print ucfirst($feature->cvname); ?> sequence
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- <pre><?php print ereg_replace("(.{100})","\\1<br>",$feature->residues); ?></pre>
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- <?php
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- if(count($orelationships) > 0){
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- foreach ($orelationships as $result){
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- print "<br>" . ucfirst($result->subject_type) . " sequence";
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- print "<pre>" . ereg_replace("(.{100})","\\1<br>",$result->subject_residues) . "</pre>";
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+ <?php print $feature->cvname; ?> sequence
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+ <pre><?php
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+ if($feature->residues){
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+ print ereg_replace("(.{100})","\\1<br>",$feature->residues);
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+ } else {
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+ print "sequence currently not available";
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}
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- }
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- ?>
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+ ?></pre>
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</div></div>
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<!-- End of sequences -->
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<!-- Start of theme_tripal_feature_feature_references -->
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@@ -133,50 +131,137 @@
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</table></div></div>
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<?php } ?>
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<!-- End of theme_tripal_feature_feature_references -->
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+ <!-- Start of theme_tripal_feature_feature_featurelocs -->
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+ <?php
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+ $featurelocs = $node->featurelocs;
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+ if(count($featurelocs) > 0){
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+ ?>
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+ <div id="feature-featurelocs" class="tripal_feature-info-box">
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+ <div class="tripal_expandableBox"><h3>Locations of <?php print $feature->featurename;?></h3></div>
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+ <div class="tripal_expandableBoxContent">
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+ <table>
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+ <tr>
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+ <th>Feature</th>
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+ <th>Type</th>
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+ <th>Position</th>
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+ <th>Phase</th>
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+ <th>Strand</th>
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+ </tr>
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+ <?php foreach ($featurelocs as $index => $loc){ ?>
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+ <tr>
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+ <td><?php print $loc->name ?></td>
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+ <td><?php print $loc->cvname ?></td>
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+ <td><?php print $loc->fmin . ".." . $loc->fmax ?></td>
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+ <td><?php print $loc->phase ?></td>
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+ <td><?php print $loc->strand ?></td>
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+ </tr>
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+ <?php } ?>
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+ </table></div></div>
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+ <?php } ?>
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+ <!-- End of theme_tripal_feature_feature_references -->
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+ <!-- Start of theme_tripal_feature_feature_myfeaturelocs -->
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+ <?php
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+ $myfeaturelocs = $node->myfeaturelocs;
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+ if(count($myfeaturelocs) > 0){
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+ ?>
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+ <div id="feature-myfeaturelocs" class="tripal_feature-info-box">
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+ <div class="tripal_expandableBox"><h3>Features Located on <?php print $feature->featurename;?></h3></div>
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+ <div class="tripal_expandableBoxContent">
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+ <table>
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+ <tr>
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+ <th>Feature</th>
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+ <th>Type</th>
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+ <th>Position</th>
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+ <th>Phase</th>
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+ <th>Strand</th>
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+ </tr>
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+ <?php foreach ($myfeaturelocs as $index => $loc){ ?>
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+ <tr>
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+ <td><?php print $loc->name ?></td>
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+ <td><?php print $loc->cvname ?></td>
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+ <td><?php print $loc->fmin . ".." . $loc->fmax ?></td>
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+ <td><?php print $loc->phase ?></td>
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+ <td><?php print $loc->strand ?></td>
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+ </tr>
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+ <?php } ?>
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+ </table></div></div>
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+ <?php } ?>
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+ <!-- End of theme_tripal_feature_feature_references -->
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<!-- Start of theme_tripal_feature_feature_relationships -->
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<?php
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- $orelationships = $node->orelationships;
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- if(count($orelationships) > 0 or count($srelationships) > 0){
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- print "<div id=\"feature-relationships\" class=\"tripal_feature-info-box\">";
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- print "<div class=\"tripal_expandableBox\"><h3>Relationships</h3></div>";
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+ $srelationships = $node->subject_relationships;
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+ if(count($srelationships) > 0){
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+ print "<div id=\"feature-srelationships\" class=\"tripal_feature-info-box\">";
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+ print "<div class=\"tripal_expandableBox\"><h3>Features that have $feature->featurename as a relationship</h3></div>";
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print "<div class=\"tripal_expandableBoxContent\">";
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-
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- if(count($orelationships) > 0){
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- foreach ($orelationships as $result){
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- if(isset($result->subject_nid)){
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- print "<a href=\"" . url("node/$result->subject_nid") . "\">$result->subject_name ($result->subject_type)</a> ";
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- } else {
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- print "$result->subject_name ($result->subject_type) ";
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- }
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- print "<b>$result->rel_type</b> ";
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- if(isset($result->object_nid)){
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- print "<a href=\"" . url("node/$result->object_nid") . "\">$result->object_name ($result->object_type)</a> ";
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- } else {
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- print "$result->object_name ($result->object_type) ";
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- }
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- print"<br>";
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+ print "
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+ <table>
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+ <tr>
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+ <th>Relationship</th>
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+ <th>Feature</th>
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+ <th>Type</th>
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+ </tr>
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+ ";
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+ foreach ($srelationships as $result){
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+ print "<tr>";
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+ print "<td><b>$result->rel_type</b></td>";
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+ print "<td>";
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+ if(isset($result->object_nid)){
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+ print "<a href=\"" . url("node/$result->object_nid") . "\">$result->object_name</a> ";
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+ } else {
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+ print "$result->object_name ";
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}
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+ print "</td>";
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+ print "<td>$result->object_type</td>";
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}
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- if(count($srelationships) > 0){
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- foreach ($srelationships as $result){
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- if(isset($result->subject_nid)){
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- print "<a href=\"" . url("node/$result->subject_nid") . "\">$result->subject_name ($result->subject_type)</a> ";
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- } else {
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- print "$result->subject_name ($result->subject_type) ";
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- }
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- print "<b>$result->rel_type</b> ";
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- if(isset($result->object_nid)){
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- print "<a href=\"" . url("node/$result->object_nid") . "\">$result->object_name ($result->object_type)</a> ";
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- } else {
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- print "$result->object_name ($result->object_type) ";
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- }
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- print"<br>";
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+ print "</table>";
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+ print "</div></div>";
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+ }
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+ ?>
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+ <!-- End of theme_tripal_feature_feature_relationships -->
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+ <!-- Start of theme_tripal_feature_feature_relationships -->
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+ <?php
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+ $orelationships = $node->object_relationships;
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+ if(count($orelationships) > 0){
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+ print "<div id=\"feature-orelationships\" class=\"tripal_feature-info-box\">";
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+ print "<div class=\"tripal_expandableBox\"><h3>Features with a relationship to $feature->featurename</h3></div>";
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+ print "<div class=\"tripal_expandableBoxContent\">";
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+
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+ print "
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+ <table>
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+ <tr>
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+ <th>Feature</th>
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+ <th>Type</th>
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+ <th>Relationship</th>
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+ <th>Position</th>
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+ </tr>
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+ ";
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+ foreach ($orelationships as $result){
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+ $subject_name = $result->subject_uniquename;
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+ if($result->subject_name) {
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+ $subject_name = $result->subject_name;
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}
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+ print "<tr>";
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+ print "<td>";
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+ if(isset($result->subject_nid)){
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+ print "<a href=\"" . url("node/$result->subject_nid") . "\">$result->subject_name ($result->subject_type)</a> ";
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+ } else {
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+ print "$subject_name";
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+ }
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+ print "</td>";
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+ print "<td>$result->subject_type</td>";
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+ print "<td><b>$result->rel_type</b></td>";
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+ print "<td>$result->src_name ($result->src_cvname): $result->fmin $result->fmax</td>";
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+ print "</tr>";
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}
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+ print "</table>";
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+
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print "</div></div>";
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}
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?>
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+
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<!-- End of theme_tripal_feature_feature_relationships -->
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+
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<?php endif; ?>
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<?php print $content?>
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</div>
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spficklin