Forráskód Böngészése

Added some additional commenting

Stephen Ficklin 5 éve
szülő
commit
02a9f47b97
1 módosított fájl, 10 hozzáadás és 6 törlés
  1. 10 6
      tripal_chado/tripal_chado.install

+ 10 - 6
tripal_chado/tripal_chado.install

@@ -30,8 +30,7 @@ function tripal_chado_install() {
     ";
     chado_query($sql);
 
-    //Fix the SOFP feature_property issue from the legacy feature_property module.
-    
+    // Fix the SOFP feature_property issue from the legacy feature_property.
     tripal_chado_fix_legacy_SOFP_7338();
 
   }
@@ -692,7 +691,12 @@ function tripal_chado_chado_cvterm_mapping_schema() {
 
 /**
  * Fixes a problem with the legacy feature_property/SOFP
- * ontology where all terms are relationships.
+ * ontology loaded with previous verions of Chado and all terms are
+ * relationships.
+ *
+ * This function is called by the tripal_chado_install() for a
+ * new Tripal setup, and the tripal_chado_update_7338 for an existing
+ * site.
  */
 
 function tripal_chado_fix_legacy_SOFP_7338() {
@@ -700,8 +704,8 @@ function tripal_chado_fix_legacy_SOFP_7338() {
   $sofp =  chado_get_db(['name' => 'SOFP']);
   $fp = chado_get_cv(['name' => 'feature_property']);
 
+  // No need to update unless the SOFP db exists
   if (!$sofp || !$fp) {
-    // No need to update unless the SOFP db exists
     return;
   }
   $terms = chado_select_record('cvterm', ['cvterm_id', 'name'], [
@@ -728,8 +732,8 @@ function tripal_chado_fix_legacy_SOFP_7338() {
     chado_update_record('cvterm', ['cvterm_id' => $id], ['is_relationshiptype' => 0]);
   }
 
-  //repopulate the mview.
-  print("repopulating the db2cv mview...");
+  // Repopulate the mview.
+  print("Repopulating the db2cv mview...");
   $mview_id = chado_get_mview_id('db2cv_mview');
   chado_populate_mview($mview_id);
 }