|
@@ -1,4 +1,3 @@
|
|
|
--- $Id: general.sql,v 1.31 2007-03-01 02:45:54 briano Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado general module
|
|
|
--
|
|
@@ -118,7 +117,6 @@ CREATE OR REPLACE FUNCTION store_dbxref (VARCHAR,VARCHAR)
|
|
|
END;
|
|
|
' LANGUAGE 'plpgsql';
|
|
|
|
|
|
--- $Id: cv.sql,v 1.37 2007-02-28 15:08:48 briano Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado cv module
|
|
|
--
|
|
@@ -984,7 +982,6 @@ BEGIN
|
|
|
END;
|
|
|
'
|
|
|
LANGUAGE 'plpgsql';
|
|
|
--- $Id: pub.sql,v 1.27 2007-02-19 20:50:44 briano Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado pub module
|
|
|
--
|
|
@@ -1120,7 +1117,6 @@ create index pubprop_idx1 on pubprop (pub_id);
|
|
|
create index pubprop_idx2 on pubprop (type_id);
|
|
|
|
|
|
COMMENT ON TABLE pubprop IS 'Property-value pairs for a pub. Follows standard chado pattern.';
|
|
|
--- $Id: organism.sql,v 1.19 2007-04-01 18:45:41 briano Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado organism module
|
|
|
--
|
|
@@ -1248,7 +1244,6 @@ CREATE OR REPLACE FUNCTION store_organism (VARCHAR,VARCHAR,VARCHAR)
|
|
|
END;
|
|
|
' LANGUAGE 'plpgsql';
|
|
|
|
|
|
--- $Id: sequence.sql,v 1.69 2009-05-14 02:44:23 scottcain Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado sequence module
|
|
|
--
|
|
@@ -38328,7 +38323,6 @@ BEGIN
|
|
|
END;
|
|
|
'
|
|
|
LANGUAGE 'plpgsql';
|
|
|
--- $Id: companalysis.sql,v 1.37 2007-03-23 15:18:02 scottcain Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado companalysis module
|
|
|
--
|
|
@@ -38463,7 +38457,6 @@ CREATE OR REPLACE FUNCTION store_analysis (VARCHAR,VARCHAR,VARCHAR)
|
|
|
--'DECLARE
|
|
|
-- v_srcfeature_id ALIAS FOR $1;
|
|
|
|
|
|
--- $Id: phenotype.sql,v 1.6 2007-04-27 16:09:46 emmert Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado phenotype module
|
|
|
--
|
|
@@ -38546,7 +38539,6 @@ CREATE INDEX feature_phenotype_idx1 ON feature_phenotype (feature_id);
|
|
|
CREATE INDEX feature_phenotype_idx2 ON feature_phenotype (phenotype_id);
|
|
|
|
|
|
COMMENT ON TABLE feature_phenotype IS NULL;
|
|
|
--- $Id: genetic.sql,v 1.31 2008-08-25 19:53:14 scottcain Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado genetics module
|
|
|
--
|
|
@@ -38775,7 +38767,6 @@ create table genotypeprop (
|
|
|
);
|
|
|
create index genotypeprop_idx1 on genotypeprop (genotype_id);
|
|
|
create index genotypeprop_idx2 on genotypeprop (type_id);
|
|
|
--- $Id: map.sql,v 1.14 2007-03-23 15:18:02 scottcain Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado map module
|
|
|
--
|
|
@@ -38870,7 +38861,6 @@ create table featuremap_pub (
|
|
|
);
|
|
|
create index featuremap_pub_idx1 on featuremap_pub (featuremap_id);
|
|
|
create index featuremap_pub_idx2 on featuremap_pub (pub_id);
|
|
|
--- $Id: phylogeny.sql,v 1.11 2007-04-12 17:00:30 briano Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado phylogenetics module
|
|
|
--
|
|
@@ -39102,7 +39092,6 @@ CREATE OR REPLACE FUNCTION phylonode_height(INT)
|
|
|
'
|
|
|
LANGUAGE 'sql';
|
|
|
|
|
|
--- $Id: contact.sql,v 1.5 2007-02-25 17:00:17 briano Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado contact module
|
|
|
--
|
|
@@ -39152,7 +39141,6 @@ COMMENT ON TABLE contact_relationship IS 'Model relationships between contacts';
|
|
|
COMMENT ON COLUMN contact_relationship.subject_id IS 'The subject of the subj-predicate-obj sentence. In a DAG, this corresponds to the child node.';
|
|
|
COMMENT ON COLUMN contact_relationship.object_id IS 'The object of the subj-predicate-obj sentence. In a DAG, this corresponds to the parent node.';
|
|
|
COMMENT ON COLUMN contact_relationship.type_id IS 'Relationship type between subject and object. This is a cvterm, typically from the OBO relationship ontology, although other relationship types are allowed.';
|
|
|
--- $Id: expression.sql,v 1.14 2007-03-23 15:18:02 scottcain Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado expression module
|
|
|
--
|
|
@@ -39431,7 +39419,6 @@ create index project_contact_idx1 on project_contact (project_id);
|
|
|
create index project_contact_idx2 on project_contact (contact_id);
|
|
|
|
|
|
COMMENT ON TABLE project_contact IS 'Linking project(s) to contact(s)';
|
|
|
--- $Id: mage.sql,v 1.3 2008-03-19 18:32:51 scottcain Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado mage module
|
|
|
--
|
|
@@ -40256,7 +40243,6 @@ CREATE TABLE studyprop_feature (
|
|
|
create index studyprop_feature_idx1 on studyprop_feature (studyprop_id);
|
|
|
create index studyprop_feature_idx2 on studyprop_feature (feature_id);
|
|
|
|
|
|
--- $Id: stock.sql,v 1.7 2007-03-23 15:18:03 scottcain Exp $
|
|
|
-- ==========================================
|
|
|
-- Chado stock module
|
|
|
--
|
|
@@ -40632,7 +40618,6 @@ hardcoding a list of columns in the relational schema, and is
|
|
|
completely extensible. There is a unique constraint, stock_dbxrefprop_c1, for
|
|
|
the combination of stock_dbxref_id, rank, and type_id. Multivalued property-value pairs must be differentiated by rank.';
|
|
|
|
|
|
--- $Id: library.sql,v 1.10 2008-03-25 16:00:43 emmert Exp $
|
|
|
-- =================================================================
|
|
|
-- Dependencies:
|
|
|
--
|