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Added bundle lookup :-)

Lacey Sanderson 5 anos atrás
pai
commit
1ece264d4b
2 arquivos alterados com 275 adições e 172 exclusões
  1. 273 171
      composer.lock
  2. 2 1
      tests/tripal/entities/PermissionsTest.php

+ 273 - 171
composer.lock

@@ -229,33 +229,37 @@
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             "provide": {
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+            "suggest": {
+                "zendframework/zend-httphandlerrunner": "Emit PSR-7 responses"
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@@ -292,20 +296,20 @@
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-            "time": "2018-12-04T20:46:45+00:00"
+            "time": "2019-07-01T23:21:34+00:00"
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@@ -340,7 +344,7 @@
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-            "time": "2018-06-11T23:09:50+00:00"
+            "time": "2019-08-09T12:45:53+00:00"
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@@ -446,35 +450,33 @@
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@@ -496,30 +498,30 @@
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+            "time": "2018-08-07T13:53:10+00:00"
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@@ -547,41 +549,40 @@
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+            "time": "2019-09-12T14:27:41+00:00"
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+                "php": "^7.1",
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@@ -594,20 +595,21 @@
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@@ -628,8 +630,8 @@
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@@ -657,7 +659,7 @@
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@@ -812,16 +814,16 @@
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@@ -857,20 +859,20 @@
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@@ -906,7 +908,7 @@
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@@ -1042,8 +1044,58 @@
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+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "MIT"
+            ],
+            "authors": [
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+                    "name": "PHP-FIG",
+                    "homepage": "http://www.php-fig.org/"
+                }
+            ],
+            "description": "Common Container Interface (PHP FIG PSR-11)",
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@@ -1096,24 +1148,24 @@
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@@ -1132,7 +1184,7 @@
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@@ -1351,16 +1403,16 @@
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@@ -1387,6 +1439,10 @@
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@@ -1395,17 +1451,13 @@
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+                },
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@@ -1414,7 +1466,7 @@
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@@ -1699,16 +1751,16 @@
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@@ -1743,29 +1795,31 @@
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             },
             "conflict": {
                 "symfony/dependency-injection": "<3.4",
+                "symfony/event-dispatcher": "<4.3",
                 "symfony/process": "<3.3"
             },
             "provide": {
@@ -1775,9 +1829,10 @@
                 "psr/log": "~1.0",
                 "symfony/config": "~3.4|~4.0",
                 "symfony/dependency-injection": "~3.4|~4.0",
-                "symfony/event-dispatcher": "~3.4|~4.0",
+                "symfony/event-dispatcher": "^4.3",
                 "symfony/lock": "~3.4|~4.0",
-                "symfony/process": "~3.4|~4.0"
+                "symfony/process": "~3.4|~4.0",
+                "symfony/var-dumper": "^4.3"
             },
             "suggest": {
                 "psr/log": "For using the console logger",
@@ -1788,7 +1843,7 @@
             "type": "library",
             "extra": {
                 "branch-alias": {
-                    "dev-master": "4.2-dev"
+                    "dev-master": "4.3-dev"
                 }
             },
             "autoload": {
@@ -1815,48 +1870,40 @@
             ],
             "description": "Symfony Console Component",
             "homepage": "https://symfony.com",
-            "time": "2019-02-23T15:17:42+00:00"
+            "time": "2019-08-26T08:26:39+00:00"
         },
         {
-            "name": "symfony/contracts",
-            "version": "v1.0.2",
+            "name": "symfony/polyfill-ctype",
+            "version": "v1.12.0",
             "source": {
                 "type": "git",
-                "url": "https://github.com/symfony/contracts.git",
-                "reference": "1aa7ab2429c3d594dd70689604b5cf7421254cdf"
+                "url": "https://github.com/symfony/polyfill-ctype.git",
+                "reference": "550ebaac289296ce228a706d0867afc34687e3f4"
             },
             "dist": {
                 "type": "zip",
-                "url": "https://api.github.com/repos/symfony/contracts/zipball/1aa7ab2429c3d594dd70689604b5cf7421254cdf",
-                "reference": "1aa7ab2429c3d594dd70689604b5cf7421254cdf",
+                "url": "https://api.github.com/repos/symfony/polyfill-ctype/zipball/550ebaac289296ce228a706d0867afc34687e3f4",
+                "reference": "550ebaac289296ce228a706d0867afc34687e3f4",
                 "shasum": ""
             },
             "require": {
-                "php": "^7.1.3"
-            },
-            "require-dev": {
-                "psr/cache": "^1.0",
-                "psr/container": "^1.0"
+                "php": ">=5.3.3"
             },
             "suggest": {
-                "psr/cache": "When using the Cache contracts",
-                "psr/container": "When using the Service contracts",
-                "symfony/cache-contracts-implementation": "",
-                "symfony/service-contracts-implementation": "",
-                "symfony/translation-contracts-implementation": ""
+                "ext-ctype": "For best performance"
             },
             "type": "library",
             "extra": {
                 "branch-alias": {
-                    "dev-master": "1.0-dev"
+                    "dev-master": "1.12-dev"
                 }
             },
             "autoload": {
                 "psr-4": {
-                    "Symfony\\Contracts\\": ""
+                    "Symfony\\Polyfill\\Ctype\\": ""
                 },
-                "exclude-from-classmap": [
-                    "**/Tests/"
+                "files": [
+                    "bootstrap.php"
                 ]
             },
             "notification-url": "https://packagist.org/downloads/",
@@ -1865,55 +1912,53 @@
             ],
             "authors": [
                 {
-                    "name": "Nicolas Grekas",
-                    "email": "p@tchwork.com"
+                    "name": "Gert de Pagter",
+                    "email": "BackEndTea@gmail.com"
                 },
                 {
                     "name": "Symfony Community",
                     "homepage": "https://symfony.com/contributors"
                 }
             ],
-            "description": "A set of abstractions extracted out of the Symfony components",
+            "description": "Symfony polyfill for ctype functions",
             "homepage": "https://symfony.com",
             "keywords": [
-                "abstractions",
-                "contracts",
-                "decoupling",
-                "interfaces",
-                "interoperability",
-                "standards"
+                "compatibility",
+                "ctype",
+                "polyfill",
+                "portable"
             ],
-            "time": "2018-12-05T08:06:11+00:00"
+            "time": "2019-08-06T08:03:45+00:00"
         },
         {
-            "name": "symfony/polyfill-ctype",
-            "version": "v1.10.0",
+            "name": "symfony/polyfill-mbstring",
+            "version": "v1.12.0",
             "source": {
                 "type": "git",
-                "url": "https://github.com/symfony/polyfill-ctype.git",
-                "reference": "e3d826245268269cd66f8326bd8bc066687b4a19"
+                "url": "https://github.com/symfony/polyfill-mbstring.git",
+                "reference": "b42a2f66e8f1b15ccf25652c3424265923eb4f17"
             },
             "dist": {
                 "type": "zip",
-                "url": "https://api.github.com/repos/symfony/polyfill-ctype/zipball/e3d826245268269cd66f8326bd8bc066687b4a19",
-                "reference": "e3d826245268269cd66f8326bd8bc066687b4a19",
+                "url": "https://api.github.com/repos/symfony/polyfill-mbstring/zipball/b42a2f66e8f1b15ccf25652c3424265923eb4f17",
+                "reference": "b42a2f66e8f1b15ccf25652c3424265923eb4f17",
                 "shasum": ""
             },
             "require": {
                 "php": ">=5.3.3"
             },
             "suggest": {
-                "ext-ctype": "For best performance"
+                "ext-mbstring": "For best performance"
             },
             "type": "library",
             "extra": {
                 "branch-alias": {
-                    "dev-master": "1.9-dev"
+                    "dev-master": "1.12-dev"
                 }
             },
             "autoload": {
                 "psr-4": {
-                    "Symfony\\Polyfill\\Ctype\\": ""
+                    "Symfony\\Polyfill\\Mbstring\\": ""
                 },
                 "files": [
                     "bootstrap.php"
@@ -1925,56 +1970,57 @@
             ],
             "authors": [
                 {
-                    "name": "Symfony Community",
-                    "homepage": "https://symfony.com/contributors"
+                    "name": "Nicolas Grekas",
+                    "email": "p@tchwork.com"
                 },
                 {
-                    "name": "Gert de Pagter",
-                    "email": "backendtea@gmail.com"
+                    "name": "Symfony Community",
+                    "homepage": "https://symfony.com/contributors"
                 }
             ],
-            "description": "Symfony polyfill for ctype functions",
+            "description": "Symfony polyfill for the Mbstring extension",
             "homepage": "https://symfony.com",
             "keywords": [
                 "compatibility",
-                "ctype",
+                "mbstring",
                 "polyfill",
-                "portable"
+                "portable",
+                "shim"
             ],
-            "time": "2018-08-06T14:22:27+00:00"
+            "time": "2019-08-06T08:03:45+00:00"
         },
         {
-            "name": "symfony/polyfill-mbstring",
-            "version": "v1.10.0",
+            "name": "symfony/polyfill-php73",
+            "version": "v1.12.0",
             "source": {
                 "type": "git",
-                "url": "https://github.com/symfony/polyfill-mbstring.git",
-                "reference": "c79c051f5b3a46be09205c73b80b346e4153e494"
+                "url": "https://github.com/symfony/polyfill-php73.git",
+                "reference": "2ceb49eaccb9352bff54d22570276bb75ba4a188"
             },
             "dist": {
                 "type": "zip",
-                "url": "https://api.github.com/repos/symfony/polyfill-mbstring/zipball/c79c051f5b3a46be09205c73b80b346e4153e494",
-                "reference": "c79c051f5b3a46be09205c73b80b346e4153e494",
+                "url": "https://api.github.com/repos/symfony/polyfill-php73/zipball/2ceb49eaccb9352bff54d22570276bb75ba4a188",
+                "reference": "2ceb49eaccb9352bff54d22570276bb75ba4a188",
                 "shasum": ""
             },
             "require": {
                 "php": ">=5.3.3"
             },
-            "suggest": {
-                "ext-mbstring": "For best performance"
-            },
             "type": "library",
             "extra": {
                 "branch-alias": {
-                    "dev-master": "1.9-dev"
+                    "dev-master": "1.12-dev"
                 }
             },
             "autoload": {
                 "psr-4": {
-                    "Symfony\\Polyfill\\Mbstring\\": ""
+                    "Symfony\\Polyfill\\Php73\\": ""
                 },
                 "files": [
                     "bootstrap.php"
+                ],
+                "classmap": [
+                    "Resources/stubs"
                 ]
             },
             "notification-url": "https://packagist.org/downloads/",
@@ -1991,29 +2037,86 @@
                     "homepage": "https://symfony.com/contributors"
                 }
             ],
-            "description": "Symfony polyfill for the Mbstring extension",
+            "description": "Symfony polyfill backporting some PHP 7.3+ features to lower PHP versions",
             "homepage": "https://symfony.com",
             "keywords": [
                 "compatibility",
-                "mbstring",
                 "polyfill",
                 "portable",
                 "shim"
             ],
-            "time": "2018-09-21T13:07:52+00:00"
+            "time": "2019-08-06T08:03:45+00:00"
+        },
+        {
+            "name": "symfony/service-contracts",
+            "version": "v1.1.6",
+            "source": {
+                "type": "git",
+                "url": "https://github.com/symfony/service-contracts.git",
+                "reference": "ea7263d6b6d5f798b56a45a5b8d686725f2719a3"
+            },
+            "dist": {
+                "type": "zip",
+                "url": "https://api.github.com/repos/symfony/service-contracts/zipball/ea7263d6b6d5f798b56a45a5b8d686725f2719a3",
+                "reference": "ea7263d6b6d5f798b56a45a5b8d686725f2719a3",
+                "shasum": ""
+            },
+            "require": {
+                "php": "^7.1.3",
+                "psr/container": "^1.0"
+            },
+            "suggest": {
+                "symfony/service-implementation": ""
+            },
+            "type": "library",
+            "extra": {
+                "branch-alias": {
+                    "dev-master": "1.1-dev"
+                }
+            },
+            "autoload": {
+                "psr-4": {
+                    "Symfony\\Contracts\\Service\\": ""
+                }
+            },
+            "notification-url": "https://packagist.org/downloads/",
+            "license": [
+                "MIT"
+            ],
+            "authors": [
+                {
+                    "name": "Nicolas Grekas",
+                    "email": "p@tchwork.com"
+                },
+                {
+                    "name": "Symfony Community",
+                    "homepage": "https://symfony.com/contributors"
+                }
+            ],
+            "description": "Generic abstractions related to writing services",
+            "homepage": "https://symfony.com",
+            "keywords": [
+                "abstractions",
+                "contracts",
+                "decoupling",
+                "interfaces",
+                "interoperability",
+                "standards"
+            ],
+            "time": "2019-08-20T14:44:19+00:00"
         },
         {
             "name": "theseer/tokenizer",
-            "version": "1.1.0",
+            "version": "1.1.3",
             "source": {
                 "type": "git",
                 "url": "https://github.com/theseer/tokenizer.git",
-                "reference": "cb2f008f3f05af2893a87208fe6a6c4985483f8b"
+                "reference": "11336f6f84e16a720dae9d8e6ed5019efa85a0f9"
             },
             "dist": {
                 "type": "zip",
-                "url": "https://api.github.com/repos/theseer/tokenizer/zipball/cb2f008f3f05af2893a87208fe6a6c4985483f8b",
-                "reference": "cb2f008f3f05af2893a87208fe6a6c4985483f8b",
+                "url": "https://api.github.com/repos/theseer/tokenizer/zipball/11336f6f84e16a720dae9d8e6ed5019efa85a0f9",
+                "reference": "11336f6f84e16a720dae9d8e6ed5019efa85a0f9",
                 "shasum": ""
             },
             "require": {
@@ -2040,20 +2143,20 @@
                 }
             ],
             "description": "A small library for converting tokenized PHP source code into XML and potentially other formats",
-            "time": "2017-04-07T12:08:54+00:00"
+            "time": "2019-06-13T22:48:21+00:00"
         },
         {
             "name": "webmozart/assert",
-            "version": "1.4.0",
+            "version": "1.5.0",
             "source": {
                 "type": "git",
                 "url": "https://github.com/webmozart/assert.git",
-                "reference": "83e253c8e0be5b0257b881e1827274667c5c17a9"
+                "reference": "88e6d84706d09a236046d686bbea96f07b3a34f4"
             },
             "dist": {
                 "type": "zip",
-                "url": "https://api.github.com/repos/webmozart/assert/zipball/83e253c8e0be5b0257b881e1827274667c5c17a9",
-                "reference": "83e253c8e0be5b0257b881e1827274667c5c17a9",
+                "url": "https://api.github.com/repos/webmozart/assert/zipball/88e6d84706d09a236046d686bbea96f07b3a34f4",
+                "reference": "88e6d84706d09a236046d686bbea96f07b3a34f4",
                 "shasum": ""
             },
             "require": {
@@ -2061,8 +2164,7 @@
                 "symfony/polyfill-ctype": "^1.8"
             },
             "require-dev": {
-                "phpunit/phpunit": "^4.6",
-                "sebastian/version": "^1.0.1"
+                "phpunit/phpunit": "^4.8.36 || ^7.5.13"
             },
             "type": "library",
             "extra": {
@@ -2091,7 +2193,7 @@
                 "check",
                 "validate"
             ],
-            "time": "2018-12-25T11:19:39+00:00"
+            "time": "2019-08-24T08:43:50+00:00"
         }
     ],
     "aliases": [],

+ 2 - 1
tests/tripal/entities/PermissionsTest.php

@@ -47,7 +47,8 @@ class PermissionsTest extends TripalTestCase {
     $faker = Factory::create();
 
     // Create organism entity for testing.
-    $bundle_name = 'bio_data_2';
+    $bundle_id = db_query("SELECT bundle_id from {chado_bundle} where data_table='organism'")->fetchField();
+    $bundle_name = 'bio_data_' . $bundle_id;
     $bundle = tripal_load_bundle_entity(['name' => $bundle_name]);
 
     $genus = $faker->word(1, TRUE);