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-<?php
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-// Purpose: This template provides the layout of the organism node (page)
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-// using the same templates used for the various feature content blocks.
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-//
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-// To Customize the Featture Node Page:
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-// - This Template: customize basic layout and which elements are included
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-// - Using Panels: Override the node page using Panels3 and place the blocks
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-// of content as you please. This method requires no programming. See
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-// the Tripal User Guide for more details
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-// - Block Templates: customize the content/layout of each block of stock
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-// content. These templates are found in the tripal_stock subdirectory
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-//
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-// Variables Available:
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-// - $node: a standard object which contains all the fields associated with
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-// nodes including nid, type, title, taxonomy. It also includes stock
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-// specific fields such as stock_name, uniquename, stock_type, synonyms,
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-// properties, db_references, object_relationships, subject_relationships,
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-// organism, etc.
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-// NOTE: For a full listing of fields available in the node object the
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-// print_r $node line below or install the Drupal Devel module which
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-// provides an extra tab at the top of the node page labelled Devel
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-dpm($variables);
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-
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-$organism = $variables['node']->organism;
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-
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-// get the template settings
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-$template_settings = theme_get_setting('tripal');
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-
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-// toggle the sidebar if desired
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-$no_sidebar = 0;
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-if (is_array($template_settings['tripal_no_sidebar']) and
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- $template_settings['tripal_no_sidebar']['organism']) {
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- $no_sidebar = 1;
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-}
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-
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-if ($teaser) {
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- print theme('tripal_organism_teaser', $variables);
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-}
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-else { ?>
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-
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-<script type="text/javascript">
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-(function ($) {
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- Drupal.behaviors.organismBehavior = {
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- attach: function (context, settings){<?php
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- // hide the resource sidbar if requested and strech the details section
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- if ($no_sidebar) { ?>
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- $(".tripal_toc").hide();
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- $(".tripal_details").addClass("tripal_details_full");
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- $(".tripal_details_full").removeClass("tripal_details"); <?php
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- }
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- // use default resource sidebar
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- else { ?>
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- $(".tripal-info-box").hide();
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-
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- // set the widths of the details and sidebar sections so they can work
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- // seemlessly with any theme.
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- total_width = $(".tripal_contents").width();
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- details_width = (total_width * 0.70) - 52; // 52 == 20 x 2 left/right padding + 10 right margin + 2pt border
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- toc_width = (total_width * 0.30) - 42; // 42 == 20 x 2 left/right padding + 2pt border
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- // don't let sidebar get wider than 200px
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- if (toc_width > 200) {
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- details_width += toc_width - 200;
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- toc_width = 200;
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- }
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- $('#tripal_organism_toc').width(toc_width);
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- $('#tripal_organism_details').width(details_width); <?php
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- } ?>
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-
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- // iterate through all of the info boxes and add their titles
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- // to the table of contents
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- $(".tripal-info-box-title").each(function(){
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- var parent = $(this).parent();
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- var id = $(parent).attr('id');
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- var title = $(this).text();
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- $('#tripal_organism_toc_list').append('<li><a href="#'+id+'" class="tripal_organism_toc_item">'+title+'</a></li>');
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- });
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-
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- // when a title in the table of contents is clicked, then
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- // show the corresponding item in the details box
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- $(".tripal_organism_toc_item").click(function(){
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- $(".tripal-info-box").hide();
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- href = $(this).attr('href');
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- if(href.match(/^#/)){
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- //alert("correct: " + href);
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- }
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- else{
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- tmp = href.replace(/^.*?#/, "#");
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- href = tmp;
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- //alert("fixed: " + href);
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- }
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- $(href).fadeIn('slow');
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- // we want to make sure our table of contents and the details
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- // box stay the same height
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- $("#tripal_organism_toc").height($(href).parent().height());
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- return false;
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- });
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-
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- // we want the base details to show up when the page is first shown
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- // unless we're using the feature browser then we want that page to show
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- var block = window.location.href.match(/[\?|\&]block=(.+?)\&/)
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- if(block == null){
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- block = window.location.href.match(/[\?|\&]block=(.+)/)
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- }
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- if(block != null){
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- $("#tripal_organism-"+block[1]+"-box").show();
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- }
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- else if(window.location.href.match(/\?page=\d+/)){
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- $("#tripal_organism-feature_browser-box").show();
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- }
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- else {
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- $("#tripal_organism-base-box").show();
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- }
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-
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- $("#tripal_organism_toc").height($("#tripal_organism-base-box").parent().height());
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- }
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- };
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-})(jQuery);
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-</script>
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-
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-<div id="tripal_organism_content" class="tripal_contents">
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- <div id="tripal_organism_details" class="tripal_details">
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-
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- <!-- Resource Blocks CCK elements --> <?php
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- if (property_exists($node, 'field_resource_titles')) {
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- for ($i = 0; $i < count($node->field_resource_titles); $i++){
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- if ($node->field_resource_titles[$i]['value']){ ?>
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- <div id="tripal_organism-resource_<?php print $i?>-box" class="tripal_organism-info-box tripal-info-box">
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- <div class="tripal_organism-info-box-title tripal-info-box-title"><?php print $node->field_resource_titles[$i]['value'] ?></div>
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- <?php print $node->field_resource_blocks[$i]['value']; ?>
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- </div> <?php
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- }
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- }
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- }?>
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- <!-- Let modules add more content -->
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- <?php
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- foreach ($content as $key => $values) {
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- if (array_key_exists('#value', $values)) {
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- print $content[$key]['#value'];
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- }
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- }
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- ?>
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-
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- </div>
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-
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- <!-- Table of contents -->
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- <div id="tripal_organism_toc" class="tripal_toc">
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- <div id="tripal_organism_toc_title" class="tripal_toc_title">Resources</i></div>
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- <span id="tripal_organism_toc_desc" class="tripal_toc_desc"></span>
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- <ul id="tripal_organism_toc_list" class="tripal_toc_list">
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-
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- <!-- Resource Links CCK elements --><?php
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- if(property_exists($node, 'field_resource_links')) {
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- for($i = 0; $i < count($node->field_resource_links); $i++){
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- if($node->field_resource_links[$i]['value']){
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- $matches = preg_split("/\|/",$node->field_resource_links[$i]['value']);?>
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- <li><a href="<?php print $matches[1] ?>" target="_blank"><?php print $matches[0] ?></a></li><?php
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- }
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- }
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- }
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- ?>
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- </ul>
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- </div>
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-</div>
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-<?php
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-} ?>
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-
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Stephen Ficklin