|
@@ -57,51 +57,11 @@ are available in Tripal v3.
|
|
|
|
|
|
|
|
|
# Installation
|
|
|
-Please follow the instructions in the online Tripal User's Guide for [Tripal v2](https://tripal.info/tutorials/v2.x/installation) or [Tripal v3](https://tripal.info/tutorials/v3.x/installation).
|
|
|
+Please follow the instructions in the online Tripal User's Guide for [Tripal v2](https://tripal.info/tutorials/v2.x/installation) or [Tripal v3](https://tripal.readthedocs.io/en/latest/user_guide.html).
|
|
|
|
|
|
|
|
|
# Upgrade from Tripal v2.x to v3.x
|
|
|
-Note: Upgrade can only be performed using the `drush` command.
|
|
|
-
|
|
|
-Note: Deprecated API functions from Tripal v1.x have been removed from Tripal
|
|
|
-v3. Therefore, use of deprecated API functions in templates or custom
|
|
|
-modules may cause a white screen of death (WSOD). Check teh server logs if this
|
|
|
-occurs to find where deprecated functions may be used.
|
|
|
-
|
|
|
-Upgrade Instructions:
|
|
|
-
|
|
|
-Step 1: Put the site in maintenance mode.
|
|
|
-
|
|
|
-Step 2: Disable tripal modules. Disabling the core module will disable all
|
|
|
-other Tripal modules:
|
|
|
-
|
|
|
- `drush pm-disable tripal_core`
|
|
|
-
|
|
|
-Step 3: Remove old Tripal v2 package and replace with Tripal v3 package
|
|
|
-Step 4: Enable the tripal module
|
|
|
-
|
|
|
- `drush pm-enable tripal`
|
|
|
-
|
|
|
-Step 5: Enable the tripal_chado module
|
|
|
-
|
|
|
- `drush pm-enable tripal_chado`
|
|
|
-
|
|
|
-Step 6: Tripal v2 modules are now called 'legacy modules'. these are the
|
|
|
-modules that were disabled in step #2. For backwards compatibility, you
|
|
|
-should re-enable these modules:
|
|
|
-
|
|
|
-```
|
|
|
- drush pm-enable tripal_core, tripal_views, tripal_db, tripal_cv, \
|
|
|
- tripal_analysis, tripal_organism, tripal_feature, tripal_pub, \
|
|
|
- tripal_stock
|
|
|
-```
|
|
|
-
|
|
|
-
|
|
|
-Be sure to enable any additional modules not included in the example
|
|
|
-drush command above.
|
|
|
-
|
|
|
-Step 7: Return to your Tripal site, and click the link that appears for
|
|
|
-preparing Chado and launch the job.
|
|
|
+Please follow the [Upgrade Instructions](https://tripal.readthedocs.io/en/latest/user_guide/install_tripal/upgrade_from_tripal2.html) in the Tripal v3 User's Guide
|
|
|
|
|
|
|
|
|
# Customization
|