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+# Run our PHPUnit tests
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+name: PHPUnit Tests
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+
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+# Controls when the action will run.
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+# Run this workflow every time a new commit is pushed to your repository
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+on: [push, pull_request]
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+
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+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
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+jobs:
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+ # This workflow contains a single job called "build"
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+ run-tests:
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+ # The type of runner that the job will run on
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+ runs-on: ubuntu-latest
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+
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+ # Service containers to run with `run-tests`
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+ services:
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+ # Label used to access the service container
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+ postgres:
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+ # Docker Hub image
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+ image: postgres
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+ env:
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+ POSTGRES_USER: postgres
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+ POSTGRES_PASSWORD: dbpass
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+ POSTGRES_DB: test_db
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+ # Set health checks to wait until postgres has started
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+ options: >-
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+ --health-cmd pg_isready
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+ --health-interval 10s
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+ --health-timeout 5s
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+ --health-retries 5
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+ ports:
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+ # Maps tcp port 5432 on service container to the host
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+ - 5432:5432
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+
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+ # Steps represent a sequence of tasks that will be executed as part of the job
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+ steps:
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+ # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
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+ - name: Checkout Repository
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+ uses: actions/checkout@v2
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+ # Sets up the PHP environment for PHP 7.2
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+ - name: Setup PHP
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+ uses: shivammathur/setup-php@v2
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+ with:
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+ php-version: '7.2'
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+ # Install extensions for PHP-PostgreSQL
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+ extensions: mbstring, intl, php-pgsql, php-gd, php-xml
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+ # Increase memory limit to 2G
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+ ini-values: memory_limit=2G
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+ # Enable xdebug for coverage reporting
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+ coverage: xdebug
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+ # Install composer and phpunit globally.
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+ tools: composer, phpunit
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+ # Install Drush 8.x globally
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+ # NOTE: `drush` is not available without the full path.
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+ # I tried adding it to the path but that broke other things.
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+ - name: Install Drush
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+ run: |
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+ composer global require "drush/drush:~8"
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+ /home/runner/.composer/vendor/bin/drush --version
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+ # Install Drupal and Drupal module dependencies for Tripal.
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+ # It also patches Drupal.
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+ - name: Install Drupal
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+ env:
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+ DRUSH: "/home/runner/.composer/vendor/bin/drush"
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+ DRUPAL_ROOT: "/home/runner/work/drupal"
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+ POSTGRES_CONNECTION_STRING: 'pgsql://postgres:dbpass@localhost:5432/test_db'
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+ ACCOUNT_NAME: tripaladmin
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+ ACCOUNT_PASS: somereallysecurepassword
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+ run: |
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+ echo "==> Downloading Drupal"
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+ cd /home/runner/work
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+ $DRUSH dl drupal-7 -y
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+ mv drupal-7* drupal
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+ echo "==> Installing Drupal"
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+ cd $DRUPAL_ROOT
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+ $DRUSH si -y --root=$DRUPAL_ROOT \
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+ --db-url=$POSTGRES_CONNECTION_STRING \
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+ --account-name=$ACCOUNT_NAME \
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+ --account-pass=$ACCOUNT_PASS \
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+ --site-mail=admin@example.com \
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+ --site-name=Tripal3
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+ echo "==> Downloading dependencies"
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+ $DRUSH dl -y views ctools entity redirect date ds field_group field_group_table
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+ echo "==> Enabling Dependencies"
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+ $DRUSH en -y views ctools entity redirect date ds field_group field_group_table
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+ echo "==> Apply Drupal Patch"
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+ cd $DRUPAL_ROOT
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+ wget --no-check-certificate https://drupal.org/files/drupal.pgsql-bytea.27.patch
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+ patch -p1 < drupal.pgsql-bytea.27.patch
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+ # Install Tripal, Chado and prepares the Drupal/Chado databases
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+ # Also patches views.
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+ - name: Install Tripal
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+ env:
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+ DRUSH: "/home/runner/.composer/vendor/bin/drush"
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+ DRUPAL_ROOT: "/home/runner/work/drupal"
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+ POSTGRES_CONNECTION_STRING: 'pgsql://postgres:dbpass@localhost:5432/test_db'
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+ ACCOUNT_NAME: tripaladmin
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+ ACCOUNT_PASS: somereallysecurepassword
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+ run: |
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+ echo "==> Move Tripal into the Drupal modules directory"
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+ ls /home/runner/work/tripal/tripal
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+ cp -R /home/runner/work/tripal/tripal $DRUPAL_ROOT/sites/all/modules
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+ echo "==> Apply Views Patch"
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+ cd $DRUPAL_ROOT/sites/all/modules/views
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+ patch -p1 < ../tripal/tripal_chado_views/views-sql-compliant-three-tier-naming-1971160-30.patch
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+ echo "==> Install Tripal"
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+ cd $DRUPAL_ROOT
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+ $DRUSH en -y tripal tripal_chado tripal_chado_views tripal_ws tripal_ds
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+ echo "==> Install Chado"
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+ $DRUSH eval "module_load_include('inc', 'tripal_chado', 'includes/tripal_chado.install'); tripal_chado_load_drush_submit('Install Chado v1.3');"
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+ $DRUSH trp-run-jobs --username=$ACCOUNT_NAME
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+ echo "==> Prepare Chado"
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+ $DRUSH eval "module_load_include('inc', 'tripal_chado', 'includes/setup/tripal_chado.setup'); tripal_chado_prepare_drush_submit();"
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+ $DRUSH trp-run-jobs --username=$ACCOUNT_NAME
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+ # Runs the PHPUnit tests.
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+ # https://github.com/mheap/phpunit-github-actions-printer is used
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+ # to report PHPUnit fails in a meaningful way to github in PRs.
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+ - name: PHPUnit Tests
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+ env:
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+ DRUSH: "/home/runner/.composer/vendor/bin/drush"
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+ DRUPAL_ROOT: "/home/runner/work/drupal"
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+ POSTGRES_CONNECTION_STRING: 'pgsql://postgres:dbpass@localhost:5432/test_db'
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+ ACCOUNT_NAME: tripaladmin
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+ ACCOUNT_PASS: somereallysecurepassword
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+ run: |
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+ cd $DRUPAL_ROOT/sites/all/modules/tripal
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+ composer require --dev mheap/phpunit-github-actions-printer
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+ composer update
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+ cp tests/.travis.env tests/.env
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+ ./vendor/bin/phpunit --printer mheap\\GithubActionsReporter\\Printer
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Lacey Sanderson