updated feature and organism default views

tripal_feature/tripal_feature.views_default.inc

@@ -34,40 +34,230 @@ function tripal_feature_views_default_views() {
  */
 function tripal_feature_defaultvalue_user_features() {
 
-  // As a shortcut, currently I am copying the admin view and then tweaking it
-  // In thie future this should be replaced by a views export
-  $view = tripal_feature_defaultview_admin_features();
-
-  // change some view admin stuff
+  $view = new view();
   $view->name = 'tripal_feature_user_feature';
-  $view->human_name = 'Feature User Search';
   $view->description = 'Allows users to search feature data';
   $view->tag = 'tripal search';
-
-  // Change the path
-  $view->display['page_1']->display_options['path'] = 'chado/feature';
-  $view->display['page_1']->display_options['menu'] = array(
-    'type' => 'normal',
-    'title' => 'Features',
-    'description' => 'A biological sequence or a section of a biological sequence, or a collection of such sections.',
-    'weight' => '-10'
+  $view->base_table = 'feature';
+  $view->human_name = 'Feature User Search';
+  $view->core = 0;
+  $view->api_version = '3.0';
+  $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
+  
+  /* Display: features_all */
+  $handler = $view->new_display('default', 'features_all', 'default');
+  $handler->display->display_options['title'] = 'Sequence Features';
+  $handler->display->display_options['use_more_always'] = FALSE;
+  $handler->display->display_options['access']['type'] = 'perm';
+  $handler->display->display_options['access']['perm'] = 'access chado_feature content';
+  $handler->display->display_options['cache']['type'] = 'none';
+  $handler->display->display_options['query']['type'] = 'views_query';
+  $handler->display->display_options['exposed_form']['type'] = 'basic';
+  $handler->display->display_options['pager']['type'] = 'full';
+  $handler->display->display_options['pager']['options']['items_per_page'] = '25';
+  $handler->display->display_options['pager']['options']['offset'] = '0';
+  $handler->display->display_options['pager']['options']['id'] = '0';
+  $handler->display->display_options['pager']['options']['quantity'] = '9';
+  $handler->display->display_options['style_plugin'] = 'table';
+  $handler->display->display_options['style_options']['grouping'] = '';
+  $handler->display->display_options['style_options']['columns'] = array(
+    'accession' => 'accession',
+    'accession_link' => 'accession_link',
+    'name' => 'name',
+    'uniquename' => 'uniquename',
+    'name_1' => 'name_1',
+    'common_name' => 'common_name',
+    'seqlen' => 'seqlen',
+    'is_obsolete' => 'is_obsolete',
+    'is_analysis' => 'is_analysis',
+    'nid' => 'nid',
   );
-  unset($view->display['page_1']->display_options['tab_options']);
-
-  // Change the permission
-  $view->display['default']->display_options['access']['perm'] = 'access chado_feature content';
-
-  // Remove edit/delete node
-  unset(
-    $view->display['default']->display_options['fields']['delete_node'],
-    $view->display['default']->display_options['fields']['edit_node'],
-    $view->display['default']->display_options['fields']['nothing']
+  $handler->display->display_options['style_options']['default'] = '-1';
+  $handler->display->display_options['style_options']['info'] = array(
+    'accession' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'accession_link' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'name' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'uniquename' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'name_1' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'common_name' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'seqlen' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'is_obsolete' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'is_analysis' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'nid' => array(
+      'separator' => '',
+    ),
   );
-
-  // Remove the admin action links
-  unset($view->display['default']->display_options['header']['action_links_area']);
-  unset($view->display['default']->display_options['header']['action_links_area_1']);
-
+  /* No results behavior: Global: Text area */
+  $handler->display->display_options['empty']['text']['id'] = 'area';
+  $handler->display->display_options['empty']['text']['table'] = 'views';
+  $handler->display->display_options['empty']['text']['field'] = 'area';
+  $handler->display->display_options['empty']['text']['content'] = 'No features matched the supplied criteria.';
+  $handler->display->display_options['empty']['text']['format'] = '2';
+  /* Relationship: Feature: Feature => Node */
+  $handler->display->display_options['relationships']['feature_id']['id'] = 'feature_id';
+  $handler->display->display_options['relationships']['feature_id']['table'] = 'chado_feature';
+  $handler->display->display_options['relationships']['feature_id']['field'] = 'feature_id';
+  /* Field: Content: Nid */
+  $handler->display->display_options['fields']['nid']['id'] = 'nid';
+  $handler->display->display_options['fields']['nid']['table'] = 'node';
+  $handler->display->display_options['fields']['nid']['field'] = 'nid';
+  $handler->display->display_options['fields']['nid']['relationship'] = 'feature_id';
+  $handler->display->display_options['fields']['nid']['exclude'] = TRUE;
+  /* Field: Node URL */
+  $handler->display->display_options['fields']['nid_1']['id'] = 'nid_1';
+  $handler->display->display_options['fields']['nid_1']['table'] = 'node';
+  $handler->display->display_options['fields']['nid_1']['field'] = 'nid';
+  $handler->display->display_options['fields']['nid_1']['relationship'] = 'feature_id';
+  $handler->display->display_options['fields']['nid_1']['ui_name'] = 'Node URL';
+  $handler->display->display_options['fields']['nid_1']['label'] = '';
+  $handler->display->display_options['fields']['nid_1']['exclude'] = TRUE;
+  $handler->display->display_options['fields']['nid_1']['alter']['alter_text'] = TRUE;
+  $handler->display->display_options['fields']['nid_1']['alter']['text'] = 'node/[nid]';
+  $handler->display->display_options['fields']['nid_1']['element_label_colon'] = FALSE;
+  /* Field: Chado Feature: Uniquename */
+  $handler->display->display_options['fields']['uniquename']['id'] = 'uniquename';
+  $handler->display->display_options['fields']['uniquename']['table'] = 'feature';
+  $handler->display->display_options['fields']['uniquename']['field'] = 'uniquename';
+  $handler->display->display_options['fields']['uniquename']['label'] = 'Unique Name';
+  $handler->display->display_options['fields']['uniquename']['alter']['make_link'] = TRUE;
+  $handler->display->display_options['fields']['uniquename']['alter']['path'] = '[nid_1]';
+  /* Field: Chado Feature: Name */
+  $handler->display->display_options['fields']['name']['id'] = 'name';
+  $handler->display->display_options['fields']['name']['table'] = 'feature';
+  $handler->display->display_options['fields']['name']['field'] = 'name';
+  $handler->display->display_options['fields']['name']['alter']['make_link'] = TRUE;
+  $handler->display->display_options['fields']['name']['alter']['path'] = '[nid_1]';
+  /* Field: Chado Cvterm: Name */
+  $handler->display->display_options['fields']['name_1']['id'] = 'name_1';
+  $handler->display->display_options['fields']['name_1']['table'] = 'cvterm';
+  $handler->display->display_options['fields']['name_1']['field'] = 'name';
+  $handler->display->display_options['fields']['name_1']['label'] = 'Type';
+  /* Field: Chado Organism: Common Name */
+  $handler->display->display_options['fields']['common_name']['id'] = 'common_name';
+  $handler->display->display_options['fields']['common_name']['table'] = 'organism';
+  $handler->display->display_options['fields']['common_name']['field'] = 'common_name';
+  /* Field: Chado Feature: Seqlen */
+  $handler->display->display_options['fields']['seqlen']['id'] = 'seqlen';
+  $handler->display->display_options['fields']['seqlen']['table'] = 'feature';
+  $handler->display->display_options['fields']['seqlen']['field'] = 'seqlen';
+  $handler->display->display_options['fields']['seqlen']['label'] = 'Sequence Length';
+  /* Field: Chado Feature: Is Obsolete */
+  $handler->display->display_options['fields']['is_obsolete']['id'] = 'is_obsolete';
+  $handler->display->display_options['fields']['is_obsolete']['table'] = 'feature';
+  $handler->display->display_options['fields']['is_obsolete']['field'] = 'is_obsolete';
+  $handler->display->display_options['fields']['is_obsolete']['type'] = 'separator';
+  $handler->display->display_options['fields']['is_obsolete']['not'] = 0;
+  /* Sort criterion: Chado Organism: Common Name */
+  $handler->display->display_options['sorts']['common_name']['id'] = 'common_name';
+  $handler->display->display_options['sorts']['common_name']['table'] = 'organism';
+  $handler->display->display_options['sorts']['common_name']['field'] = 'common_name';
+  /* Sort criterion: Chado Cvterm: Name */
+  $handler->display->display_options['sorts']['name']['id'] = 'name';
+  $handler->display->display_options['sorts']['name']['table'] = 'cvterm';
+  $handler->display->display_options['sorts']['name']['field'] = 'name';
+  /* Sort criterion: Chado Feature: Name */
+  $handler->display->display_options['sorts']['name_1']['id'] = 'name_1';
+  $handler->display->display_options['sorts']['name_1']['table'] = 'feature';
+  $handler->display->display_options['sorts']['name_1']['field'] = 'name';
+  /* Filter criterion: Chado Feature: Uniquename */
+  $handler->display->display_options['filters']['uniquename']['id'] = 'uniquename';
+  $handler->display->display_options['filters']['uniquename']['table'] = 'feature';
+  $handler->display->display_options['filters']['uniquename']['field'] = 'uniquename';
+  $handler->display->display_options['filters']['uniquename']['operator'] = 'contains';
+  $handler->display->display_options['filters']['uniquename']['group'] = 1;
+  $handler->display->display_options['filters']['uniquename']['exposed'] = TRUE;
+  $handler->display->display_options['filters']['uniquename']['expose']['operator_id'] = 'uniquename_op';
+  $handler->display->display_options['filters']['uniquename']['expose']['label'] = 'Unique Name';
+  $handler->display->display_options['filters']['uniquename']['expose']['use_operator'] = TRUE;
+  $handler->display->display_options['filters']['uniquename']['expose']['operator'] = 'uniquename_op';
+  $handler->display->display_options['filters']['uniquename']['expose']['identifier'] = 'uniquename';
+  $handler->display->display_options['filters']['uniquename']['expose']['remember_roles'] = array(
+    2 => '2',
+    1 => 0,
+    3 => 0,
+  );
+  $handler->display->display_options['filters']['uniquename']['select_optional'] = TRUE;
+  $handler->display->display_options['filters']['uniquename']['max_length'] = '40';
+  /* Filter criterion: Chado Feature: Name */
+  $handler->display->display_options['filters']['name_1']['id'] = 'name_1';
+  $handler->display->display_options['filters']['name_1']['table'] = 'feature';
+  $handler->display->display_options['filters']['name_1']['field'] = 'name';
+  $handler->display->display_options['filters']['name_1']['operator'] = 'contains';
+  $handler->display->display_options['filters']['name_1']['group'] = 1;
+  $handler->display->display_options['filters']['name_1']['exposed'] = TRUE;
+  $handler->display->display_options['filters']['name_1']['expose']['operator_id'] = 'name_1_op';
+  $handler->display->display_options['filters']['name_1']['expose']['label'] = 'Name Contains';
+  $handler->display->display_options['filters']['name_1']['expose']['use_operator'] = TRUE;
+  $handler->display->display_options['filters']['name_1']['expose']['operator'] = 'name_1_op';
+  $handler->display->display_options['filters']['name_1']['expose']['identifier'] = 'name';
+  $handler->display->display_options['filters']['name_1']['expose']['remember_roles'] = array(
+    2 => '2',
+    1 => 0,
+    3 => 0,
+  );
+  /* Filter criterion: Chado Feature: Type Id */
+  $handler->display->display_options['filters']['type_id']['id'] = 'type_id';
+  $handler->display->display_options['filters']['type_id']['table'] = 'feature';
+  $handler->display->display_options['filters']['type_id']['field'] = 'type_id';
+  $handler->display->display_options['filters']['type_id']['value'] = array();
+  $handler->display->display_options['filters']['type_id']['group'] = 1;
+  $handler->display->display_options['filters']['type_id']['exposed'] = TRUE;
+  $handler->display->display_options['filters']['type_id']['expose']['operator_id'] = 'type_id_op';
+  $handler->display->display_options['filters']['type_id']['expose']['label'] = 'Type';
+  $handler->display->display_options['filters']['type_id']['expose']['operator'] = 'type_id_op';
+  $handler->display->display_options['filters']['type_id']['expose']['identifier'] = 'type_id';
+  $handler->display->display_options['filters']['type_id']['values_form_type'] = 'select';
+  $handler->display->display_options['filters']['type_id']['select_optional'] = TRUE;
+  /* Filter criterion: Chado Organism: Common Name */
+  $handler->display->display_options['filters']['common_name']['id'] = 'common_name';
+  $handler->display->display_options['filters']['common_name']['table'] = 'organism';
+  $handler->display->display_options['filters']['common_name']['field'] = 'common_name';
+  $handler->display->display_options['filters']['common_name']['value'] = array();
+  $handler->display->display_options['filters']['common_name']['group'] = 1;
+  $handler->display->display_options['filters']['common_name']['exposed'] = TRUE;
+  $handler->display->display_options['filters']['common_name']['expose']['operator_id'] = 'common_name_op';
+  $handler->display->display_options['filters']['common_name']['expose']['label'] = 'Organism Common Name';
+  $handler->display->display_options['filters']['common_name']['expose']['operator'] = 'common_name_op';
+  $handler->display->display_options['filters']['common_name']['expose']['identifier'] = 'organism';
+  $handler->display->display_options['filters']['common_name']['values_form_type'] = 'select';
+  $handler->display->display_options['filters']['common_name']['select_optional'] = TRUE;
+  
+  /* Display: Page */
+  $handler = $view->new_display('page', 'Page', 'page_1');
+  $handler->display->display_options['path'] = 'chado/feature';
+  $handler->display->display_options['menu']['type'] = 'normal';
+  $handler->display->display_options['menu']['title'] = 'Features';
+  $handler->display->display_options['menu']['description'] = 'A biological sequence or a section of a biological sequence, or a collection of such sections.';
+  $handler->display->display_options['menu']['weight'] = '-10';
+  
+  
   return $view;
 }
 

tripal_organism/tripal_organism.views_default.inc

@@ -34,38 +34,167 @@ function tripal_organism_views_default_views() {
  */
 function tripal_organism_defaultvalue_user_organisms() {
 
-  // As a shortcut, currently I am copying the admin view and then tweaking it
-  // In thie future this should be replaced by a views export
-  $view = tripal_organism_admin_defaultview_organisms();
-
-  // change some view admin stuff
+  $view = new view();
   $view->name = 'tripal_organism_user_organisms';
-  $view->human_name = 'Organism User Search';
   $view->description = 'Allows users to search organism data';
   $view->tag = 'tripal search';
-
-  // Change the path
-  $view->display['page_1']->display_options['path'] = 'chado/organism';
-  $view->display['page_1']->display_options['menu'] = array(
-    'type' => 'normal',
-    'title' => 'Organisms',
-    'description' => 'Any living biological entity, such as an animal, plant, fungus, or bacterium.',
-    'weight' => '-10'
+  $view->base_table = 'organism';
+  $view->human_name = 'Organism User Search';
+  $view->core = 0;
+  $view->api_version = '3.0';
+  $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
+  
+  /* Display: Defaults */
+  $handler = $view->new_display('default', 'Defaults', 'default');
+  $handler->display->display_options['title'] = 'Organisms';
+  $handler->display->display_options['use_more_always'] = FALSE;
+  $handler->display->display_options['access']['type'] = 'perm';
+  $handler->display->display_options['access']['perm'] = 'access chado_organism content';
+  $handler->display->display_options['cache']['type'] = 'none';
+  $handler->display->display_options['query']['type'] = 'views_query';
+  $handler->display->display_options['exposed_form']['type'] = 'basic';
+  $handler->display->display_options['exposed_form']['options']['submit_button'] = 'Filter';
+  $handler->display->display_options['pager']['type'] = 'full';
+  $handler->display->display_options['pager']['options']['items_per_page'] = '25';
+  $handler->display->display_options['pager']['options']['offset'] = '0';
+  $handler->display->display_options['pager']['options']['id'] = '0';
+  $handler->display->display_options['pager']['options']['quantity'] = '9';
+  $handler->display->display_options['style_plugin'] = 'table';
+  $handler->display->display_options['style_options']['grouping'] = '';
+  $handler->display->display_options['style_options']['columns'] = array(
+    'common_name' => 'common_name',
+    'genus' => 'genus',
+    'species' => 'species',
+    'abbreviation' => 'abbreviation',
   );
-  unset($view->display['page_1']->display_options['tab_options']);
-
-  // Change the permission
-  $view->display['default']->display_options['access']['perm'] = 'access chado_organism content';
-
-  // Remove edit/delete node
-  unset(
-    $view->display['default']->display_options['fields']['delete_node'],
-    $view->display['default']->display_options['fields']['edit_node'],
-    $view->display['default']->display_options['fields']['nothing']
+  $handler->display->display_options['style_options']['default'] = '-1';
+  $handler->display->display_options['style_options']['info'] = array(
+    'common_name' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'genus' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'species' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
+    'abbreviation' => array(
+      'sortable' => 1,
+      'separator' => '',
+    ),
   );
-
-  // Remove the admin action links
-  unset($view->display['default']->display_options['header']['action_links_area']);
+  /* No results behavior: Global: Text area */
+  $handler->display->display_options['empty']['text']['id'] = 'area';
+  $handler->display->display_options['empty']['text']['table'] = 'views';
+  $handler->display->display_options['empty']['text']['field'] = 'area';
+  $handler->display->display_options['empty']['text']['content'] = 'No organisms matched the supplied criteria.';
+  $handler->display->display_options['empty']['text']['format'] = '1';
+  /* Relationship: Organism: Organism => Node */
+  $handler->display->display_options['relationships']['organism_id']['id'] = 'organism_id';
+  $handler->display->display_options['relationships']['organism_id']['table'] = 'chado_organism';
+  $handler->display->display_options['relationships']['organism_id']['field'] = 'organism_id';
+  /* Field: Content: Nid */
+  $handler->display->display_options['fields']['nid']['id'] = 'nid';
+  $handler->display->display_options['fields']['nid']['table'] = 'node';
+  $handler->display->display_options['fields']['nid']['field'] = 'nid';
+  $handler->display->display_options['fields']['nid']['exclude'] = TRUE;
+  /* Field: Node URL */
+  $handler->display->display_options['fields']['nid_1']['id'] = 'nid_1';
+  $handler->display->display_options['fields']['nid_1']['table'] = 'node';
+  $handler->display->display_options['fields']['nid_1']['field'] = 'nid';
+  $handler->display->display_options['fields']['nid_1']['ui_name'] = 'Node URL';
+  $handler->display->display_options['fields']['nid_1']['label'] = '';
+  $handler->display->display_options['fields']['nid_1']['exclude'] = TRUE;
+  $handler->display->display_options['fields']['nid_1']['alter']['alter_text'] = TRUE;
+  $handler->display->display_options['fields']['nid_1']['alter']['text'] = 'node/[nid]';
+  $handler->display->display_options['fields']['nid_1']['element_label_colon'] = FALSE;
+  /* Field: Chado Organism: Genus */
+  $handler->display->display_options['fields']['genus']['id'] = 'genus';
+  $handler->display->display_options['fields']['genus']['table'] = 'organism';
+  $handler->display->display_options['fields']['genus']['field'] = 'genus';
+  /* Field: Chado Organism: Species */
+  $handler->display->display_options['fields']['species']['id'] = 'species';
+  $handler->display->display_options['fields']['species']['table'] = 'organism';
+  $handler->display->display_options['fields']['species']['field'] = 'species';
+  /* Field: Global: Custom text */
+  $handler->display->display_options['fields']['nothing']['id'] = 'nothing';
+  $handler->display->display_options['fields']['nothing']['table'] = 'views';
+  $handler->display->display_options['fields']['nothing']['field'] = 'nothing';
+  $handler->display->display_options['fields']['nothing']['label'] = 'Scientific Name';
+  $handler->display->display_options['fields']['nothing']['alter']['text'] = '<i>[genus]  [species]</i>';
+  $handler->display->display_options['fields']['nothing']['alter']['make_link'] = TRUE;
+  $handler->display->display_options['fields']['nothing']['alter']['path'] = '[nid_1]';
+  /* Field: Chado Organism: Common Name */
+  $handler->display->display_options['fields']['common_name']['id'] = 'common_name';
+  $handler->display->display_options['fields']['common_name']['table'] = 'organism';
+  $handler->display->display_options['fields']['common_name']['field'] = 'common_name';
+  $handler->display->display_options['fields']['common_name']['alter']['path'] = '[nid_1]';
+  /* Field: Chado Organism: Abbreviation */
+  $handler->display->display_options['fields']['abbreviation']['id'] = 'abbreviation';
+  $handler->display->display_options['fields']['abbreviation']['table'] = 'organism';
+  $handler->display->display_options['fields']['abbreviation']['field'] = 'abbreviation';
+  /* Sort criterion: Chado Organism: Genus */
+  $handler->display->display_options['sorts']['genus']['id'] = 'genus';
+  $handler->display->display_options['sorts']['genus']['table'] = 'organism';
+  $handler->display->display_options['sorts']['genus']['field'] = 'genus';
+  /* Sort criterion: Chado Organism: Species */
+  $handler->display->display_options['sorts']['species']['id'] = 'species';
+  $handler->display->display_options['sorts']['species']['table'] = 'organism';
+  $handler->display->display_options['sorts']['species']['field'] = 'species';
+  /* Filter criterion: Chado Organism: Common Name */
+  $handler->display->display_options['filters']['common_name']['id'] = 'common_name';
+  $handler->display->display_options['filters']['common_name']['table'] = 'organism';
+  $handler->display->display_options['filters']['common_name']['field'] = 'common_name';
+  $handler->display->display_options['filters']['common_name']['operator'] = 'contains';
+  $handler->display->display_options['filters']['common_name']['exposed'] = TRUE;
+  $handler->display->display_options['filters']['common_name']['expose']['operator_id'] = '';
+  $handler->display->display_options['filters']['common_name']['expose']['label'] = 'Common Name Contains';
+  $handler->display->display_options['filters']['common_name']['expose']['identifier'] = 'common_name';
+  $handler->display->display_options['filters']['common_name']['expose']['remember_roles'] = array(
+    2 => '2',
+    1 => 0,
+    3 => 0,
+  );
+  /* Filter criterion: Chado Organism: Genus */
+  $handler->display->display_options['filters']['genus']['id'] = 'genus';
+  $handler->display->display_options['filters']['genus']['table'] = 'organism';
+  $handler->display->display_options['filters']['genus']['field'] = 'genus';
+  $handler->display->display_options['filters']['genus']['exposed'] = TRUE;
+  $handler->display->display_options['filters']['genus']['expose']['operator_id'] = 'genus_op';
+  $handler->display->display_options['filters']['genus']['expose']['label'] = 'Genus';
+  $handler->display->display_options['filters']['genus']['expose']['operator'] = 'genus_op';
+  $handler->display->display_options['filters']['genus']['expose']['identifier'] = 'genus';
+  $handler->display->display_options['filters']['genus']['expose']['remember_roles'] = array(
+    2 => '2',
+    1 => 0,
+    3 => 0,
+  );
+  /* Filter criterion: Chado Organism: Species */
+  $handler->display->display_options['filters']['species']['id'] = 'species';
+  $handler->display->display_options['filters']['species']['table'] = 'organism';
+  $handler->display->display_options['filters']['species']['field'] = 'species';
+  $handler->display->display_options['filters']['species']['exposed'] = TRUE;
+  $handler->display->display_options['filters']['species']['expose']['operator_id'] = 'species_op';
+  $handler->display->display_options['filters']['species']['expose']['label'] = 'Species';
+  $handler->display->display_options['filters']['species']['expose']['operator'] = 'species_op';
+  $handler->display->display_options['filters']['species']['expose']['identifier'] = 'species';
+  $handler->display->display_options['filters']['species']['expose']['remember_roles'] = array(
+    2 => '2',
+    1 => 0,
+    3 => 0,
+  );
+  
+  /* Display: Page */
+  $handler = $view->new_display('page', 'Page', 'page_1');
+  $handler->display->display_options['path'] = 'chado/organism';
+  $handler->display->display_options['menu']['type'] = 'normal';
+  $handler->display->display_options['menu']['title'] = 'Organisms';
+  $handler->display->display_options['menu']['description'] = 'Any living biological entity, such as an animal, plant, fungus, or bacterium.';
+  $handler->display->display_options['menu']['weight'] = '-10';
+    
 
   return $view;
 }