Initial import of version 2.0

theme_tripal/css/tripal.css

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+/*
+ Copyright 2009 Clemson University
+*/
+
+table.tripal_table_vert {
+   width: 0px;  /* reset the table width */
+}
+
+tbody.tripal_table_vert, tbody th {
+   border: 0px solid #CCCCCC;
+   padding: 0px;
+}
+
+table.tripal_table_horz {
+   width: 0px;  /* reset the table width */
+}
+
+tbody.tripal_table_horz, tbody th {
+   border: 0px solid #CCCCCC;
+   padding: 5px 15px 10px 0px;
+   margin: 0px;
+}
+
+td.tripal_table_horz, td {  
+   padding: 0px 15px 5px 0px;
+   margin: 0px;
+}
+
+.tripal_expandableBox {
+   padding: 10px 10px 10px 10px;
+   border: 1px solid #CCC5AE;
+   cursor: pointer; /* hand-shaped cursor */
+   background-image: url("../images/arrow-up-48x48.png");
+   background-repeat: no-repeat;
+   background-position: top right; 
+   background-color: #EEEFFF;
+}
+
+.tripal_expandableBoxContent{
+   margin: 0 0 0 0;
+   padding: 5px 5px 5px 5px;
+   clear:both;
+   border-right: 1px solid #CCC5AE;
+   border-bottom: 1px solid #CCC5AE;
+   border-left: 1px solid #CCC5AE;
+   background-color: #FFFFFF;
+   font-size: small;
+   overflow: auto;
+}
+
+.tripal_expandableSubBoxContent{
+   padding: 5px 5px 5px 5px;
+   clear:both;
+   border-right: 1px solid #CCC5AE;
+   border-bottom: 1px solid #CCC5AE;
+   border-left: 1px solid #CCC5AE;
+   border-top: 1px solid #CCC5AE;
+   background-color: #EEFEEE;
+   overflow: auto;
+   min-height: 150px;
+   font-family: courier;
+}
+
+#tripal_expandableBox_toggle_button {
+   cursor: pointer; /* hand-shaped cursor */
+}
+
+#tripal_ajaxLoading {
+   position: fixed;
+   top: 40%;
+   left: 40%;
+   padding: 15px;
+   border: 1px solid #000000;
+   background-color: #EEEEEE;
+   opacity: 0.75;
+   -moz-opacity: 0.75;
+   z-index: 10;
+}
+
+#tripal_ajaxLoading #loadingText {
+   font-weight: bold;
+   font-size: 1.5em;
+   color: #000000;
+}
+
+/* Restrict the list of checkboxes in a 300px window */
+.form-checkboxes {
+   height: auto;
+   max-height: 300px;
+   overflow: auto;
+}

theme_tripal/css/tripal_analysis_blast.css

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+/*
+ Copyright 2009 Clemson University
+*/
+
+.tripal_blast-info-box {
+   margin-top: 10px;
+   margin-left: 0px;
+   margin-right: 0px;
+   margin-bottom: 0px;
+   padding-top: 0px;
+   padding-left: 0px;
+   padding-bottom: 0px;
+   padding-right: 0px;
+   border-collapse: collapse;
+   z-index: 10;
+}
+
+.tripal_blast_results_table {
+    width: 100%;  
+}
+
+.tripal_blast_results_table td{
+   vertical-align: top;
+}

theme_tripal/css/tripal_analysis_go.css

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+/*
+ Copyright 2009 Clemson University
+*/
+
+.tripal_go-info-box, .tripal_go_summary-info-box {
+   margin-top: 10px;
+   margin-left: 0px;
+   margin-right: 0px;
+   margin-bottom: 0px;
+   padding-top: 0px;
+   padding-left: 0px;
+   padding-bottom: 0px;
+   padding-right: 0px;
+   border-collapse: collapse;
+   z-index: 10;
+}
+
+.tripal_go_summary-info-box .tripal_cv_tree {
+   border-collapse: separate;
+}

theme_tripal/css/tripal_analysis_interpro.css

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+/*
+ Copyright 2009 Clemson University
+*/
+
+.tripal_interpro-info-box {
+   margin-top: 10px;
+   margin-left: 0px;
+   margin-right: 0px;
+   margin-bottom: 0px;
+   padding-top: 0px;
+   padding-left: 0px;
+   padding-bottom: 0px;
+   padding-right: 0px;
+   border-collapse: collapse;
+   z-index: 10;
+}
+
+.tripal_interpro_results_table {
+   width: 95%;
+   margin-left: auto;
+   margin-right: auto;
+}
+
+.tripal_interpro_results_table tbody {
+    border-top: none;
+}
+
+.tripal_interpro_results_table tbody tr td table{
+   background: #FFFFFF;
+}
+
+.tripal_interpro_results_table tbody tr td table tr{
+   background: #FFFFFF;
+}
+
+.tripal_interpro_results_table tbody tr td table tr td{
+   background: #FFFFFF;
+}

theme_tripal/css/tripal_analysis_kegg.css

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+/*
+ Copyright 2009 Clemson University
+*/
+
+.tripal_kegg-info-box, .tripal_kegg_summary-info-box {
+   margin-top: 10px;
+   margin-left: 0px;
+   margin-right: 0px;
+   margin-bottom: 0px;
+   padding-top: 0px;
+   padding-left: 0px;
+   padding-bottom: 0px;
+   padding-right: 0px;
+   border-collapse: collapse;
+   z-index: 10;
+}
+
+.tripal_kegg_brite_terms {
+   line-height: 170%;
+   text-align: left;
+}
+
+#tripal_kegg_brite_results .tripal_expandableBoxContent table {
+   border-collapse: separate;
+}
+
+#tripal_kegg_brite_links {
+   background-image:url("../images/kegg.gif");
+   background-repeat: no-repeat;
+}
+
+#tripal_kegg_feature_links {
+   background-image:none;
+   background-repeat: no-repeat;
+   padding:0px 0px 0px 0px;
+}
+
+.tripal_kegg_results_table #tripal_kegg_brite_links {
+   padding: 0px 0px 0px 22px;
+}
+
+#tripal_kegg_brite_results .tripal_expandableBoxContent {
+   height: 600px;
+   overflow: auto;   
+}

theme_tripal/css/tripal_analysis_unigene.css

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+/*
+ Copyright 2009 Clemson University
+*/
+
+.tripal_unigene-info-box {
+   margin-top: 10px;
+   margin-left: 0px;
+   margin-right: 0px;
+   margin-bottom: 0px;
+   padding-top: 0px;
+   padding-left: 0px;
+   padding-bottom: 0px;
+   padding-right: 0px;
+   border-collapse: collapse;
+   z-index: 10;
+}

theme_tripal/css/tripal_cv.css

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+/*
+ Copyright 2009 Clemson University
+*/
+
+.treeview .placeholder {
+	background: url(images/ajax-loader.gif) 0 0 no-repeat;
+	height: 16px;
+	width: 16px;
+	display: block;
+}
+
+#tripal_cv_cvterm_info_box {
+   position: absolute;
+   top: 0%; left: 30%;
+   padding:10px;
+   width:650px;
+   display: none;
+   border: 1px solid #000000;
+   background-color: #EFEFEF;
+   opacity: 0.90;
+   -moz-opacity: 0.90;
+   z-index: 10;
+   -webkit-border-radius: 5px;
+   -moz-border-radius: 5px;
+   border-radius: 5px;
+   color: #000000;
+}
+
+#tripal_cv_cvterm_info_box h3 {
+   border-bottom: 1px solid #AAAAAA;
+}
+
+#tripal_cv_cvterm_info {
+   color: #000000;
+}

theme_tripal/css/tripal_organism.css

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+/*
+ Copyright 2009 Clemson University
+*/
+
+.tripal_organism-image {
+   float: right;
+   margin-left: 10px;
+   margin-bottom: 10px;
+}
+
+.tripal_organism-details {
+   position: relative;
+}
+