Removed temp linking file for views

tripal_views/views/chado_linking.TMP.inc

@@ -1,409 +0,0 @@
-<?php
-
-/**
- * @file
- * This is a temporary function holding all the old-style views integration
- * needed to link the base tables to their node. This will remain to keep things working
- * until it has been best determined how to do this via the new tripal_views integration
- *
- * It's called att the bottom of tripal_views_views_data()
- */
-function tripal_views_TEMPORARY_chado_linking_data($data) {
-  global $db_url;
-
-  // if the chado database is not local to the drupal database
-  // then we need to set the database name.  This should always
-  // be 'chado'.
-  if (is_array($db_url) and array_key_exists('chado', $db_url)) {
-    // return empty data array b/c if chado is external then no join to the nodetable can be made
-    return $data;
-  }
-
-  // FEATURE ====================================
-  if (module_exists('tripal_feature')) {
-    // Basic table definition
-    $data['chado_feature']['table'] = array(
-      'field' => 'nid',
-      'group' => 'Chado Feature'
-    );
-
-    $data['chado_feature']['nid'] = array(
-      'title' => t('Feature Node ID'),
-      'help' => t('The node ID for this feature'),
-      'field' => array(
-        'handler' => 'views_handler_field_numeric',
-        'click sortable' => TRUE,
-      ),
-      'filter' => array(
-        'handler' => 'views_handler_filter_numeric',
-      ),
-      'sort' => array(
-        'handler' => 'views_handler_sort',
-      ),
-    );
-
-    // Note: No joins need to be made from $data['feature']['table']
-
-    // Join the chado feature table to feature
-    $data['chado_feature']['table']['join']['feature'] = array(
-      'left_field' => 'feature_id',
-      'field' => 'feature_id',
-    );
-
-    // Join the node table to chado feature
-    $data['node']['table']['join']['chado_feature'] = array(
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Join the node table to feature
-    $data['node']['table']['join']['feature'] = array(
-      'left_table' => 'chado_feature',
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Add relationship between chado_feature and feature
-    $data['chado_feature']['feature_nid'] = array(
-      'group' => 'Feature',
-      'title' => 'Feature Node',
-      'help' => 'Links Chado Feature Fields/Data to the Nodes in the current View.',
-      'real field' => 'feature_id',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Feature'),
-        'label' => t('Chado => Feature'),
-        'real field' => 'feature_id',
-        'base' => 'feature',
-        'base field' => 'feature_id'
-      ),
-    );
-
-    // Add node relationship to feature
-    $data['chado_feature']['feature_chado_nid'] = array(
-      'group' => 'Feature',
-      'title' => 'Feature Node',
-      'help' => 'Links Chado Feature Fields/Data to the Nodes in the current View.',
-      'real field' => 'nid',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Node'),
-        'label' => t('Chado => Node'),
-        'real field' => 'nid',
-        'base' => 'node',
-        'base field' => 'nid'
-      ),
-    );
-  }
-
-  // ANALYSIS ===================================
-  if (module_exists('tripal_analysis')) {
-    // Basic table definition
-    $data['chado_analysis']['table'] = array(
-      'field' => 'nid',
-      'group' => 'Chado Analysis'
-    );
-
-    $data['chado_analysis']['nid'] = array(
-      'title' => t('Analysis Node ID'),
-      'help' => t('The node ID for this analysis'),
-      'field' => array(
-        'handler' => 'views_handler_field_numeric',
-        'click sortable' => TRUE,
-      ),
-      'filter' => array(
-        'handler' => 'views_handler_filter_numeric',
-      ),
-      'sort' => array(
-        'handler' => 'views_handler_sort',
-      ),
-    );
-
-    // Note: No joins need to be made from $data['analysis']['table']
-
-    // Join the chado analysis table to analysis
-    $data['chado_analysis']['table']['join']['analysis'] = array(
-      'left_field' => 'analysis_id',
-      'field' => 'analysis_id',
-    );
-
-    // Join the node table to chado analysis
-    $data['node']['table']['join']['chado_analysis'] = array(
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Join the node table to analysis
-    $data['node']['table']['join']['analysis'] = array(
-      'left_table' => 'chado_analysis',
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Add relationship between chado_analysis and analysis
-    $data['chado_analysis']['analysis_nid'] = array(
-      'group' => 'Analysis',
-      'title' => 'Analysis Node',
-      'help' => 'Links Chado Analysis Fields/Data to the Nodes in the current View.',
-      'real field' => 'analysis_id',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Analysis'),
-        'label' => t('Chado => Analysis'),
-        'real field' => 'analysis_id',
-        'base' => 'analysis',
-        'base field' => 'analysis_id'
-      ),
-    );
-
-    // Add node relationship to analysis
-    $data['chado_analysis']['analysis_chado_nid'] = array(
-      'group' => 'Analysis',
-      'title' => 'Analysis Node',
-      'help' => 'Links Chado Analysis Fields/Data to the Nodes in the current View.',
-      'real field' => 'nid',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Node'),
-        'label' => t('Chado => Node'),
-        'real field' => 'nid',
-        'base' => 'node',
-        'base field' => 'nid'
-      ),
-    );
-  }
-
-  // ORGANISM ===================================
-  if (module_exists('tripal_organism')) {
-    // Basic table definition
-    $data['chado_organism']['table'] = array(
-      'field' => 'nid',
-      'group' => 'Chado Organism'
-    );
-
-    $data['chado_organism']['nid'] = array(
-      'title' => t('Organism Node ID'),
-      'help' => t('The node ID for this organism'),
-      'field' => array(
-        'handler' => 'views_handler_field_numeric',
-        'click sortable' => TRUE,
-      ),
-      'filter' => array(
-        'handler' => 'views_handler_filter_numeric',
-      ),
-      'sort' => array(
-        'handler' => 'views_handler_sort',
-      ),
-    );
-
-    // Note: No joins need to be made from $data['organism']['table']
-
-    // Join the chado organism table to organism
-    $data['chado_organism']['table']['join']['organism'] = array(
-      'left_field' => 'organism_id',
-      'field' => 'organism_id',
-    );
-
-    // Join the node table to chado organism
-    $data['node']['table']['join']['chado_organism'] = array(
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Join the node table to organism
-    $data['node']['table']['join']['organism'] = array(
-      'left_table' => 'chado_organism',
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Add relationship between chado_organism and organism
-    $data['chado_organism']['organism_id'] = array(
-      'group' => 'Organism',
-      'title' => 'Organism Node',
-      'help' => 'Links Chado Organism Fields/Data to the Nodes in the current View.',
-      'real field' => 'organism_id',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Organism'),
-        'label' => t('Chado => Organism'),
-        'real field' => 'organism_id',
-        'base' => 'organism',
-        'base field' => 'organism_id'
-      ),
-    );
-  /*
-    // Add node relationship to organism
-    $data['chado_organism']['nid'] = array(
-      'group' => 'Organism',
-      'title' => 'Organism Node',
-      'help' => 'Links Chado Organism Fields/Data to the Nodes in the current View.',
-      'real field' => 'nid',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Node'),
-        'label' => t('Chado => Node'),
-        'real field' => 'nid',
-        'base' => 'node',
-        'base field' => 'nid'
-      ),
-    );
-  */
-  }
-
-  // LIBRARY ====================================
-  if (module_exists('tripal_library')) {
-    // Basic table definition
-    $data['chado_library']['table'] = array(
-      'field' => 'nid',
-      'group' => 'Chado Library'
-    );
-
-    $data['chado_library']['nid'] = array(
-      'title' => t('Library Node ID'),
-      'help' => t('The node ID for this library'),
-      'field' => array(
-        'handler' => 'views_handler_field_numeric',
-        'click sortable' => TRUE,
-      ),
-      'filter' => array(
-        'handler' => 'views_handler_filter_numeric',
-      ),
-      'sort' => array(
-        'handler' => 'views_handler_sort',
-      ),
-    );
-
-    // Note: No joins need to be made from $data['library']['table']
-
-    // Join the chado library table to library
-    $data['chado_library']['table']['join']['library'] = array(
-      'left_field' => 'library_id',
-      'field' => 'library_id',
-    );
-
-    // Join the node table to chado library
-    $data['node']['table']['join']['chado_library'] = array(
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Join the node table to library
-    $data['node']['table']['join']['library'] = array(
-      'left_table' => 'chado_library',
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Add relationship between chado_library and library
-    $data['chado_library']['library_nid'] = array(
-      'group' => 'Library',
-      'title' => 'Library Node',
-      'help' => 'Links Chado Library Fields/Data to the Nodes in the current View.',
-      'real field' => 'library_id',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Library'),
-        'label' => t('Chado => Library'),
-        'real field' => 'library_id',
-        'base' => 'library',
-        'base field' => 'library_id'
-      ),
-    );
-
-    // Add node relationship to library
-    $data['chado_library']['library_chado_nid'] = array(
-      'group' => 'Library',
-      'title' => 'Library Node',
-      'help' => 'Links Chado Library Fields/Data to the Nodes in the current View.',
-      'real field' => 'nid',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Node'),
-        'label' => t('Chado => Node'),
-        'real field' => 'nid',
-        'base' => 'node',
-        'base field' => 'nid'
-      ),
-    );
-  }
-
-  // STOCK ======================================
-  if (module_exists('tripal_stock')) {
-    // Basic table definition
-    $data['chado_stock']['table'] = array(
-      'field' => 'stock_id',
-      'group' => 'Chado Stock',
-    );
-
-    $data['chado_stock']['nid'] = array(
-      'title' => t('Stock Node ID'),
-      'help' => t('The node ID for this analysis'),
-      'field' => array(
-        'handler' => 'views_handler_field_numeric',
-        'click sortable' => TRUE,
-      ),
-      'filter' => array(
-        'handler' => 'views_handler_filter_numeric',
-      ),
-      'sort' => array(
-        'handler' => 'views_handler_sort',
-      ),
-    );
-
-    // Note: No joins need to be made from $data['stock']['table']
-
-    // Join the chado stock table to stock
-    $data['chado_stock']['table']['join']['stock'] = array(
-      'left_field' => 'stock_id',
-      'field' => 'stock_id',
-    );
-
-    // Join the node table to chado stock
-    $data['node']['table']['join']['chado_stock'] = array(
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Join the node table to stock
-    $data['node']['table']['join']['stock'] = array(
-      'left_table' => 'chado_stock',
-      'left_field' => 'nid',
-      'field' => 'nid',
-    );
-
-    // Add relationship between chado_stock and stock
-    $data['chado_stock']['stock_nid'] = array(
-      'group' => 'Stock',
-      'title' => 'Stock Node',
-      'help' => 'Links Chado Stock Fields/Data to the Nodes in the current View.',
-      'real field' => 'stock_id',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Stock'),
-        'label' => t('Chado => Stock'),
-        'real field' => 'stock_id',
-        'base' => 'stock',
-        'base field' => 'stock_id'
-      ),
-    );
-
-    // Add node relationship to stock
-    $data['chado_stock']['stock_chado_nid'] = array(
-      'group' => 'Stock',
-      'title' => 'Stock Node',
-      'help' => 'Links Chado Stock Fields/Data to the Nodes in the current View.',
-      'real field' => 'nid',
-      'relationship' => array(
-        'handler' => 'views_handler_relationship',
-        'title' => t('Chado => Node'),
-        'label' => t('Chado => Node'),
-        'real field' => 'nid',
-        'base' => 'node',
-        'base field' => 'nid'
-      ),
-    );
-  }
-
-  return $data;
-}