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@@ -967,7 +967,7 @@ class OBOImporter extends TripalImporter {
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throw new Exception(t('Cannot find the ontology via an EBI OLS lookup: !short_name. ' .
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'EBI Reported: !message. ' .
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'Consider finding the OBO file for this ontology and manually loading it first.',
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- ['!message' => $results['message'], '!short_name' => $short_name]));
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+ ['!message' => $ontology_results['message'], '!short_name' => $short_name]));
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}
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$base_iri = $ontology_results['config']['baseUris'][0];
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$ontologyID = $ontology_results['ontologyId'];
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@@ -1612,7 +1612,7 @@ class OBOImporter extends TripalImporter {
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if (array_key_exists('synonym', $stanza)) {
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foreach ($stanza['synonym'] as $index => $synonym) {
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if (preg_match('/\"(.*?)\".*(EXACT|NARROW|BROAD|RELATED)/', $synonym, $matches)) {
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- $stanza['synonym'][$index] = '"' . $matches[1] . '" ' . $maches[2];
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+ $stanza['synonym'][$index] = '"' . $matches[1] . '" ' . $matches[2];
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}
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}
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}
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@@ -1660,7 +1660,7 @@ class OBOImporter extends TripalImporter {
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if ($this->cache_type == 'table') {
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$sql = "SELECT id FROM {tripal_obo_temp} WHERE type = 'Typedef' ";
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$typedefs = chado_query($sql);
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- return $typdefs;
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+ return $typedefs;
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}
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return $this->termStanzaCache['types'][$type];
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}
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