Feature Map: Added default admin view

tripal_featuremap/includes/tripal_featuremap.admin.inc

@@ -1,4 +1,38 @@
 <?php
+
+/**
+ * Admin launchpad
+ */
+function tripal_featuremap_admin_featuremaps_listing() {
+  $output = '';
+
+  // set the breadcrumb
+  $breadcrumb = array();
+  $breadcrumb[] = l('Home', '<front>');
+  $breadcrumb[] = l('Administration', 'admin');
+  $breadcrumb[] = l('Tripal', 'admin/tripal');
+  $breadcrumb[] = l('Chado', 'admin/tripal/chado');
+  $breadcrumb[] = l('Maps', 'admin/tripal/chado/tripal_featuremap');
+  drupal_set_breadcrumb($breadcrumb);
+
+  // Add the view
+  $view = views_embed_view('tripal_featuremap_admin_featuremaps','default');
+  if (isset($view)) {
+    $output .= $view;
+  }
+  else {
+    $output .= '<p>The Tripal Feature Map Module uses primarily views to provide an '
+      . 'administrative interface. Currently one or more views needed for this '
+      . 'administrative interface are disabled. <strong>Click each of the following links to '
+      . 'enable the pertinent views</strong>:</p>';
+    $output .= '<ul>';
+      $output .= '<li>'.l('Feature Map Admin', 'admin/tripal/chado/tripal_featuremap/views/featuremaps/enable').'</li>';
+    $output .= '</ul>';
+  }
+
+  return $output;
+}
+
 /**
  * Administrative settings form
  *
@@ -19,7 +53,7 @@ function tripal_featuremap_admin() {
   if (!$active_jobs) {
     get_tripal_featuremap_admin_form_sync_set($form);
     get_tripal_featuremap_admin_form_cleanup_set($form);
-// TODO: complete coding of indexing and taxonomy assignment to features.    
+// TODO: complete coding of indexing and taxonomy assignment to features.
 //    get_tripal_featuremap_admin_form_reindex_set($form);
 //    get_tripal_featuremap_admin_form_taxonomy_set($form);
   }
@@ -368,7 +402,7 @@ function tripal_featuremap_sync_featuremaps($featuremap_id = NULL, $job_id = NUL
 function tripal_featuremap_cleanup($dummy = NULL, $job_id = NULL) {
 
   return tripal_core_clean_orphaned_nodes('featuremap', $job_id);
-  
+
 }
 /**
  * Add the map as a taxonomy term for associating with map_features

tripal_featuremap/tripal_featuremap.module

@@ -134,22 +134,32 @@ function tripal_featuremap_menu() {
   $items = array();
 
   // The administative settings menu
-  $items['admin/tripal/tripal_featuremap'] = array(
+  $items['admin/tripal/chado/tripal_featuremap'] = array(
     'title' => 'Maps',
+    'description' => 'Genetic Maps of Features',
+    'page callback' => 'tripal_featuremap_admin_featuremaps_listing',
+    'access arguments' => array('administer tripal featuremap'),
+    'type' => MENU_NORMAL_ITEM,
+  );
+
+  $items['admin/tripal/chado/tripal_featuremap/help'] = array(
+    'title' => 'Help',
     'description' => 'Basic Description of Tripal Map Module Functionality',
     'page callback' => 'theme',
-    'page arguments' => array('tripal_featuremap_admin'),
+    'page arguments' => array('tripal_featuremap_help'),
     'access arguments' => array('administer tripal featuremap'),
-    'type' => MENU_NORMAL_ITEM,
+    'type' => MENU_LOCAL_TASK,
+    'weight' => 10
   );
 
-  $items['admin/tripal/tripal_featuremap/configuration'] = array(
-    'title' => 'Configuration',
+  $items['admin/tripal/chado/tripal_featuremap/configuration'] = array(
+    'title' => 'Settings',
     'description' => 'Manage integration of Chado maps including associated features.',
     'page callback' => 'drupal_get_form',
     'page arguments' => array('tripal_featuremap_admin'),
     'access arguments' => array('administer tripal featuremap'),
-    'type' => MENU_NORMAL_ITEM,
+    'type' => MENU_LOCAL_TASK,
+    'weight' => 2
   );
 
   // Synchronizing maps from Chado to Drupal
@@ -178,6 +188,14 @@ function tripal_featuremap_menu() {
     'type ' => MENU_CALLBACK,
   );
 
+  $items['admin/tripal/chado/tripal_featuremap/views/featuremaps/enable'] = array(
+    'title' => 'Enable featuremap Administrative View',
+    'page callback' => 'tripal_views_admin_enable_view',
+    'page arguments' => array('tripal_featuremap_admin_featuremaps', 'admin/tripal/chado/tripal_featuremap'),
+    'access arguments' => array('administer tripal_bulk_loader'),
+    'type' => MENU_CALLBACK,
+  );
+
   return $items;
 }
 
@@ -230,8 +248,8 @@ function tripal_featuremap_theme() {
       'arguments' => array('node' => NULL),
       'template' => 'tripal_featuremap_references',
     ),
-    'tripal_featuremap_admin' => array(
-      'template' => 'tripal_featuremap_admin',
+    'tripal_featuremap_help' => array(
+      'template' => 'tripal_featuremap_help',
       'arguments' =>  array(NULL),
       'path' => drupal_get_path('module', 'tripal_featuremap') . '/theme'
     ),

tripal_featuremap/tripal_featuremap.views_default.inc

@@ -8,365 +8,183 @@
 function tripal_featuremap_views_default_views() {
   $views = array();
 
-  if (!module_exists('tripal_views')) {
-    return $views;
-  }
+  $view = tripal_featuremap_defaultview_admin_featuremaps();
+  $views[$view->name] = $view;
+
+  return $views;
+}
+
+function tripal_featuremap_defaultview_admin_featuremaps() {
 
-  // Main default view
-  $view = new view;
-  $view->name = 'featuremap_listing';
-  $view->description = 'A listing of all chado feature maps';
-  $view->tag = 'chado default';
+  $view = new view();
+  $view->name = 'tripal_featuremap_admin_featuremaps';
+  $view->description = 'DO NOT DISABLE';
+  $view->tag = 'tripal admin';
   $view->base_table = 'featuremap';
+  $view->human_name = 'Feature Map Admin';
   $view->core = 6;
-  $view->api_version = '2';
+  $view->api_version = '3.0';
   $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
+
+  /* Display: Defaults */
   $handler = $view->new_display('default', 'Defaults', 'default');
-  $handler->override_option('fields', array(
-    'name' => array(
-      'label' => 'Name',
-      'alter' => array(
-        'alter_text' => 0,
-        'text' => '',
-        'make_link' => 0,
-        'path' => 'node/[nid]',
-        'absolute' => 0,
-        'link_class' => '',
-        'alt' => '',
-        'rel' => '',
-        'prefix' => '',
-        'suffix' => '',
-        'target' => '',
-        'help' => '',
-        'trim' => 0,
-        'max_length' => '',
-        'word_boundary' => 1,
-        'ellipsis' => 1,
-        'html' => 0,
-        'strip_tags' => 0,
-      ),
-      'empty' => '',
-      'hide_empty' => 0,
-      'empty_zero' => 0,
-      'link_to_node' => 1,
-      'hide_alter_empty' => 1,
-      'type' => 'separator',
-      'separator' => ', ',
-      'exclude' => 0,
-      'id' => 'name',
-      'table' => 'featuremap',
-      'field' => 'name',
-      'relationship' => 'none',
-    ),
-    'description' => array(
-      'label' => 'Description',
-      'alter' => array(
-        'alter_text' => 0,
-        'text' => '',
-        'make_link' => 0,
-        'path' => '',
-        'absolute' => 0,
-        'link_class' => '',
-        'alt' => '',
-        'rel' => '',
-        'prefix' => '',
-        'suffix' => '',
-        'target' => '',
-        'help' => '',
-        'trim' => 0,
-        'max_length' => '',
-        'word_boundary' => 1,
-        'ellipsis' => 1,
-        'html' => 0,
-        'strip_tags' => 0,
-      ),
-      'empty' => '',
-      'hide_empty' => 0,
-      'link_to_node' => 0,
-      'empty_zero' => 0,
-      'hide_alter_empty' => 1,
-      'type' => 'separator',
-      'separator' => ', ',
-      'exclude' => 0,
-      'id' => 'description',
-      'table' => 'featuremap',
-      'field' => 'description',
-      'relationship' => 'none',
-    ),
-    'name_1' => array(
-      'label' => 'Map Units',
-      'alter' => array(
-        'alter_text' => 0,
-        'text' => '',
-        'make_link' => 0,
-        'path' => '',
-        'absolute' => 0,
-        'link_class' => '',
-        'alt' => '',
-        'rel' => '',
-        'prefix' => '',
-        'suffix' => '',
-        'target' => '',
-        'help' => '',
-        'trim' => 0,
-        'max_length' => '',
-        'word_boundary' => 1,
-        'ellipsis' => 1,
-        'html' => 0,
-        'strip_tags' => 0,
-      ),
-      'empty' => '',
-      'hide_empty' => 0,
-      'link_to_node' => 0,
-      'empty_zero' => 0,
-      'hide_alter_empty' => 1,
-      'type' => 'separator',
-      'separator' => ', ',
-      'exclude' => 0,
-      'id' => 'name_1',
-      'table' => 'cvterm',
-      'field' => 'name',
-      'relationship' => 'none',
-    ),
-  ));
-  $handler->override_option('sorts', array(
-    'name' => array(
-      'order' => 'ASC',
-      'id' => 'name',
-      'table' => 'featuremap',
-      'field' => 'name',
-      'relationship' => 'none',
-    ),
-  ));
-  $handler->override_option('filters', array(
-    'unittype_id' => array(
-      'operator' => '=',
-      'value' => '',
-      'group' => '0',
-      'exposed' => TRUE,
-      'expose' => array(
-        'use_operator' => 0,
-        'operator' => 'unittype_id_op',
-        'identifier' => 'unittype_id',
-        'label' => 'Map Units',
-        'remember' => 0,
-      ),
-      'case' => 1,
-      'id' => 'unittype_id',
-      'table' => 'featuremap',
-      'field' => 'unittype_id',
-      'relationship' => 'none',
-      'values_form_type' => 'select',
-      'multiple' => 1,
-      'optional' => 0,
-      'show_all' => 0,
-      'agg' => array(
-        'records_with' => 1,
-        'aggregates_with' => 1,
-      ),
-    ),
-    'name_1' => array(
-      'operator' => '~',
-      'value' => '',
-      'group' => '0',
-      'exposed' => TRUE,
-      'expose' => array(
-        'use_operator' => 0,
-        'operator' => 'name_1_op',
-        'identifier' => 'name_1',
-        'label' => 'Name',
-        'remember' => 0,
-      ),
-      'case' => 0,
-      'id' => 'name_1',
-      'table' => 'featuremap',
-      'field' => 'name',
-      'relationship' => 'none',
-      'agg' => array(
-        'records_with' => 1,
-        'aggregates_with' => 1,
-      ),
-    ),
-    'description' => array(
-      'operator' => '~',
-      'value' => '',
-      'group' => '0',
-      'exposed' => TRUE,
-      'expose' => array(
-        'use_operator' => 0,
-        'operator' => 'description_op',
-        'identifier' => 'description',
-        'label' => 'Description',
-        'remember' => 0,
-      ),
-      'case' => 0,
-      'id' => 'description',
-      'table' => 'featuremap',
-      'field' => 'description',
-      'relationship' => 'none',
-      'agg' => array(
-        'records_with' => 1,
-        'aggregates_with' => 1,
-      ),
-    ),
-    'search_results' => array(
-      'operator' => '=',
-      'value' => '',
-      'group' => '0',
-      'exposed' => FALSE,
-      'expose' => array(
-        'operator' => FALSE,
-        'label' => '',
-      ),
-      'id' => 'search_results',
-      'table' => 'views',
-      'field' => 'search_results',
-      'relationship' => 'none',
-      'apply_button' => 'Show',
-      'no_results_text' => 'Click "Show" to see a list of all feature maps matching the entered criteria. If you leave a any of the criteria blank then the maps will be not be filtered based on that field. Furthermore, if you leave all criteria blank then all maps will be listed.',
-    ),
-  ));
-  $handler->override_option('access', array(
-    'type' => 'perm',
-    'perm' => 'access chado_featuremap content',
-  ));
-  $handler->override_option('cache', array(
-    'type' => 'none',
-  ));
-  $handler->override_option('title', 'Maps');
-  $handler->override_option('header', 'Click "Show" to see a list of all feature maps matching the entered criteria. If you leave a any of the criteria blank then the maps will be not be filtered based on that field. Furthermore, if you leave all criteria blank then all maps will be listed.');
-  $handler->override_option('header_format', '1');
-  $handler->override_option('header_empty', 1);
-  $handler->override_option('empty', 'No feature maps match the current criteria.');
-  $handler->override_option('empty_format', '1');
-  $handler->override_option('items_per_page', 25);
-  $handler->override_option('use_pager', '1');
-  $handler->override_option('style_plugin', 'table');
-  $handler->override_option('style_options', array(
-    'grouping' => '',
-    'override' => 1,
-    'sticky' => 0,
-    'order' => 'asc',
-    'summary' => '',
-    'columns' => array(
-      'name' => 'name',
-      'description' => 'description',
-      'name_1' => 'name_1',
-      'nid' => 'nid',
-    ),
-    'info' => array(
-      'name' => array(
-        'sortable' => 1,
-        'separator' => '',
-      ),
-      'description' => array(
-        'sortable' => 1,
-        'separator' => '',
-      ),
-      'name_1' => array(
-        'sortable' => 1,
-        'separator' => '',
-      ),
-      'nid' => array(
-        'separator' => '',
-      ),
-    ),
-    'default' => '-1',
-  ));
-  $default_handler = $handler;
-  $handler = $view->new_display('page', 'Page', 'page_1');
-  $handler->override_option('path', 'chado/featuremaps');
-  $handler->override_option('menu', array(
-    'type' => 'normal',
-    'title' => 'Maps',
-    'description' => 'A listing of chado feature maps.',
-    'weight' => '0',
-    'name' => 'navigation',
-  ));
-  $handler->override_option('tab_options', array(
-    'type' => 'none',
-    'title' => '',
-    'description' => '',
-    'weight' => 0,
-    'name' => 'navigation',
-  ));
+  $handler->display->display_options['title'] = 'Maps';
+  $handler->display->display_options['use_more_always'] = FALSE;
+  $handler->display->display_options['access']['type'] = 'perm';
+  $handler->display->display_options['access']['perm'] = 'access chado_featuremap content';
+  $handler->display->display_options['cache']['type'] = 'none';
+  $handler->display->display_options['query']['type'] = 'views_query';
+  $handler->display->display_options['exposed_form']['type'] = 'basic';
+  $handler->display->display_options['exposed_form']['options']['submit_button'] = 'Filter';
+  $handler->display->display_options['pager']['type'] = 'full';
+  $handler->display->display_options['pager']['options']['items_per_page'] = '25';
+  $handler->display->display_options['pager']['options']['offset'] = '0';
+  $handler->display->display_options['pager']['options']['id'] = '0';
+  $handler->display->display_options['pager']['options']['quantity'] = '9';
+  $handler->display->display_options['style_plugin'] = 'table';
+  $handler->display->display_options['style_options']['grouping'] = '';
+  $handler->display->display_options['style_options']['columns'] = array(
+  'name' => 'name',
+  'description' => 'description',
+  'name_1' => 'name_1',
+  'nid' => 'nid',
+  );
+  $handler->display->display_options['style_options']['default'] = '-1';
+  $handler->display->display_options['style_options']['info'] = array(
+  'name' => array(
+    'sortable' => 1,
+    'separator' => '',
+  ),
+  'description' => array(
+    'sortable' => 1,
+    'separator' => '',
+  ),
+  'name_1' => array(
+    'sortable' => 1,
+    'separator' => '',
+  ),
+  'nid' => array(
+    'separator' => '',
+  ),
+  );
+  /* Header: Global: Action Links */
+  $handler->display->display_options['header']['action_links_area']['id'] = 'action_links_area';
+  $handler->display->display_options['header']['action_links_area']['table'] = 'views';
+  $handler->display->display_options['header']['action_links_area']['field'] = 'action_links_area';
+  $handler->display->display_options['header']['action_links_area']['label'] = 'Action Links';
+  $handler->display->display_options['header']['action_links_area']['empty'] = TRUE;
+  $handler->display->display_options['header']['action_links_area']['link-1'] = array(
+  'label-1' => 'Add Map',
+  'path-1' => 'node/add/tripal-featuremap',
+  );
+  $handler->display->display_options['header']['action_links_area']['link-2'] = array(
+  'label-2' => '',
+  'path-2' => '',
+  );
+  $handler->display->display_options['header']['action_links_area']['link-3'] = array(
+  'label-3' => '',
+  'path-3' => '',
+  );
+  $handler->display->display_options['header']['action_links_area']['link-4'] = array(
+  'label-4' => '',
+  'path-4' => '',
+  );
+  /* No results behavior: Global: Text area */
+  $handler->display->display_options['empty']['text']['id'] = 'area';
+  $handler->display->display_options['empty']['text']['table'] = 'views';
+  $handler->display->display_options['empty']['text']['field'] = 'area';
+  $handler->display->display_options['empty']['text']['content'] = 'No feature maps match the current criteria.';
+  $handler->display->display_options['empty']['text']['format'] = '1';
+  /* Relationship: Featuremap: Featuremap => Node */
+  $handler->display->display_options['relationships']['featuremap_id']['id'] = 'featuremap_id';
+  $handler->display->display_options['relationships']['featuremap_id']['table'] = 'chado_featuremap';
+  $handler->display->display_options['relationships']['featuremap_id']['field'] = 'featuremap_id';
+  /* Field: Content: Nid */
+  $handler->display->display_options['fields']['nid']['id'] = 'nid';
+  $handler->display->display_options['fields']['nid']['table'] = 'node';
+  $handler->display->display_options['fields']['nid']['field'] = 'nid';
+  $handler->display->display_options['fields']['nid']['relationship'] = 'featuremap_id';
+  $handler->display->display_options['fields']['nid']['exclude'] = TRUE;
+  /* Field: Chado Featuremap: Name */
+  $handler->display->display_options['fields']['name']['id'] = 'name';
+  $handler->display->display_options['fields']['name']['table'] = 'featuremap';
+  $handler->display->display_options['fields']['name']['field'] = 'name';
+  $handler->display->display_options['fields']['name']['alter']['path'] = 'node/[nid]';
+  /* Field: Chado Featuremap: Description */
+  $handler->display->display_options['fields']['description']['id'] = 'description';
+  $handler->display->display_options['fields']['description']['table'] = 'featuremap';
+  $handler->display->display_options['fields']['description']['field'] = 'description';
+  /* Field: Chado Cvterm: Name */
+  $handler->display->display_options['fields']['name_1']['id'] = 'name_1';
+  $handler->display->display_options['fields']['name_1']['table'] = 'cvterm';
+  $handler->display->display_options['fields']['name_1']['field'] = 'name';
+  $handler->display->display_options['fields']['name_1']['label'] = 'Map Units';
+  /* Field: Content: Delete link */
+  $handler->display->display_options['fields']['delete_node']['id'] = 'delete_node';
+  $handler->display->display_options['fields']['delete_node']['table'] = 'views_entity_node';
+  $handler->display->display_options['fields']['delete_node']['field'] = 'delete_node';
+  $handler->display->display_options['fields']['delete_node']['relationship'] = 'featuremap_id';
+  $handler->display->display_options['fields']['delete_node']['exclude'] = TRUE;
+  /* Field: Content: Edit link */
+  $handler->display->display_options['fields']['edit_node']['id'] = 'edit_node';
+  $handler->display->display_options['fields']['edit_node']['table'] = 'views_entity_node';
+  $handler->display->display_options['fields']['edit_node']['field'] = 'edit_node';
+  $handler->display->display_options['fields']['edit_node']['relationship'] = 'featuremap_id';
+  $handler->display->display_options['fields']['edit_node']['exclude'] = TRUE;
+  /* Field: Global: Custom text */
+  $handler->display->display_options['fields']['nothing']['id'] = 'nothing';
+  $handler->display->display_options['fields']['nothing']['table'] = 'views';
+  $handler->display->display_options['fields']['nothing']['field'] = 'nothing';
+  $handler->display->display_options['fields']['nothing']['label'] = '';
+  $handler->display->display_options['fields']['nothing']['alter']['text'] = '[edit_node]   [delete_node]';
+  $handler->display->display_options['fields']['nothing']['element_label_colon'] = FALSE;
+  /* Sort criterion: Chado Featuremap: Name */
+  $handler->display->display_options['sorts']['name']['id'] = 'name';
+  $handler->display->display_options['sorts']['name']['table'] = 'featuremap';
+  $handler->display->display_options['sorts']['name']['field'] = 'name';
+  /* Filter criterion: Chado Featuremap: Name */
+$handler->display->display_options['filters']['name_1']['id'] = 'name_1';
+$handler->display->display_options['filters']['name_1']['table'] = 'featuremap';
+$handler->display->display_options['filters']['name_1']['field'] = 'name';
+$handler->display->display_options['filters']['name_1']['operator'] = 'contains';
+$handler->display->display_options['filters']['name_1']['group'] = '0';
+$handler->display->display_options['filters']['name_1']['exposed'] = TRUE;
+$handler->display->display_options['filters']['name_1']['expose']['operator_id'] = 'name_1_op';
+$handler->display->display_options['filters']['name_1']['expose']['label'] = 'Name Contains';
+$handler->display->display_options['filters']['name_1']['expose']['operator'] = 'name_1_op';
+$handler->display->display_options['filters']['name_1']['expose']['identifier'] = 'name_1';
+$handler->display->display_options['filters']['name_1']['expose']['remember_roles'] = array(
+  2 => '2',
+  1 => 0,
+  3 => 0,
+);
+/* Filter criterion: Chado Featuremap: Description */
+$handler->display->display_options['filters']['description']['id'] = 'description';
+$handler->display->display_options['filters']['description']['table'] = 'featuremap';
+$handler->display->display_options['filters']['description']['field'] = 'description';
+$handler->display->display_options['filters']['description']['operator'] = 'contains';
+$handler->display->display_options['filters']['description']['group'] = '0';
+$handler->display->display_options['filters']['description']['exposed'] = TRUE;
+$handler->display->display_options['filters']['description']['expose']['operator_id'] = 'description_op';
+$handler->display->display_options['filters']['description']['expose']['label'] = 'Description Contains';
+$handler->display->display_options['filters']['description']['expose']['operator'] = 'description_op';
+$handler->display->display_options['filters']['description']['expose']['identifier'] = 'description';
+$handler->display->display_options['filters']['description']['expose']['remember_roles'] = array(
+  2 => '2',
+  1 => 0,
+  3 => 0,
+);
 
-  // Add code specific to a local chado installation
-  // NOTE: Edit $handler above to $default_handler for the default display
-  if (tripal_core_chado_schema_exists()) {
-    // Add nid field
-    $fields = $view->get_items('field', 'default');
-    $new_fields = array(
-      'nid' => array(
-        'label' => 'Nid',
-        'alter' => array(
-          'alter_text' => 0,
-          'text' => '',
-          'make_link' => 0,
-          'path' => '',
-          'absolute' => 0,
-          'link_class' => '',
-          'alt' => '',
-          'rel' => '',
-          'prefix' => '',
-          'suffix' => '',
-          'target' => '',
-          'help' => '',
-          'trim' => 0,
-          'max_length' => '',
-          'word_boundary' => 1,
-          'ellipsis' => 1,
-          'html' => 0,
-          'strip_tags' => 0,
-        ),
-        'empty' => '',
-        'hide_empty' => 0,
-        'empty_zero' => 0,
-        'hide_alter_empty' => 1,
-        'link_to_node' => 0,
-        'exclude' => 1,
-        'id' => 'nid',
-        'table' => 'node',
-        'field' => 'nid',
-        'relationship' => 'none',
-      )
-    );
-    $fields = $new_fields + $fields;
-    // Adds feature => Node relationship
-    $default_handler->override_option('relationships', array(
-      'nid' => array(
-        'label' => 'Map to Node',
-        'required' => 0,
-        'id' => 'nid',
-        'table' => 'chado_featuremap',
-        'field' => 'nid',
-        'relationship' => 'none',
-      ),
-    ));
-    // Change analysis.name to have a link to the node
-    $fields['name']['alter']['link_to_node'] = 1;
-    $default_handler->override_option('fields', $fields);
-    // Only show records with published nodes
-    /**
-    $filters = $view->get_items('filter', 'default');
-    $filters['status'] = array(
-      'operator' => '=',
-      'value' => '1',
-      'group' => '0',
-      'exposed' => FALSE,
-      'expose' => array(
-        'operator' => FALSE,
-        'label' => '',
-      ),
-      'id' => 'status',
-      'table' => 'node',
-      'field' => 'status',
-      'relationship' => 'none',
-    );
-    $default_handler->override_option('filters', $filters);
-    */
-  }
-  $views[$view->name] = $view;
+  /* Display: Page */
+  $handler = $view->new_display('page', 'Page', 'page_1');
+  $handler->display->display_options['path'] = 'admin/tripal/chado/tripal_featuremap/featuremaps';
+  $handler->display->display_options['menu']['type'] = 'default tab';
+  $handler->display->display_options['menu']['title'] = 'Maps';
+  $handler->display->display_options['menu']['description'] = 'A listing of chado feature maps.';
+  $handler->display->display_options['menu']['weight'] = '-10';
+  $handler->display->display_options['menu']['context'] = 0;
+  $handler->display->display_options['menu']['context_only_inline'] = 0;
+  $handler->display->display_options['tab_options']['weight'] = '0';
 
-  return $views;
-}
+  return $view;
+}

tripal_library/tripal_library.module

@@ -155,6 +155,15 @@ function tripal_library_menu() {
     'access arguments' => array('administer tripal libraries'),
     'type' => MENU_CALLBACK
   );
+
+  $items['admin/tripal/chado/tripal_library/views/libraries/enable'] = array(
+    'title' => 'Enable Library Administrative View',
+    'page callback' => 'tripal_views_admin_enable_view',
+    'page arguments' => array('tripal_library_admin_libraries', 'admin/tripal/chado/tripal_library'),
+    'access arguments' => array('administer tripal libraries'),
+    'type' => MENU_CALLBACK,
+  );
+
   return $items;
 }
 

tripal_library/tripal_library.views_default.inc

@@ -35,7 +35,11 @@ function tripal_library_admin_defaultviews_library() {
   $handler->display->display_options['cache']['type'] = 'none';
   $handler->display->display_options['query']['type'] = 'views_query';
   $handler->display->display_options['exposed_form']['type'] = 'basic';
-  $handler->display->display_options['pager']['type'] = 'none';
+  $handler->display->display_options['pager']['type'] = 'full';
+  $handler->display->display_options['pager']['options']['items_per_page'] = '25';
+  $handler->display->display_options['pager']['options']['offset'] = '0';
+  $handler->display->display_options['pager']['options']['id'] = '0';
+  $handler->display->display_options['pager']['options']['quantity'] = '9';
   $handler->display->display_options['style_plugin'] = 'table';
   $handler->display->display_options['style_options']['grouping'] = '';
   $handler->display->display_options['style_options']['columns'] = array(