theme_tripal/tripal_analysis/tripal_analysis_teaser.tpl.php

@@ -0,0 +1,53 @@
+<?php
+$node = $variables['node'];
+$analysis = $variables['node']->analysis;
+
+// the description is a text field so we want to expand that
+$analysis = tripal_core_expand_chado_vars($analysis,'field','analysis.description');
+
+
+?>
+<div id="tripal_analysis-base-box" class="tripal_analysis-info-box tripal-info-box">
+  <div class="tripal_analysis-info-box-title tripal-info-box-title">Details</div>
+   <table id="tripal_analysis-table-base" class="tripal_analysis-table tripal-table tripal-table-vert">
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th>Analysis Name</th>
+        <td><?php print $analysis->name; ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Software</th>
+        <td><?php 
+          print $analysis->program; 
+          if($analysis->programversion){
+             print " (" . $analysis->programversion . ")"; 
+          }
+          if($analysis->algorithm){
+             print ". " . $analysis->algorithm; 
+          }
+          ?>
+        </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Source</th>
+        <td><?php 
+          if($analysis->sourceuri){
+             print "<a href=\"$analysis->sourceuri\">$analysis->sourcename</a>"; 
+          } else {
+             print $analysis->sourcename; 
+          }
+          if($analysis->sourceversion){
+             print " (" . $analysis->sourceversion . ")"; 
+          }
+          ?>
+          </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Date performed</th>
+        <td><?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Description</th>
+        <td><?php print $analysis->description; ?></td>
+      </tr>             	                                
+   </table>   
+</div>

theme_tripal/tripal_library/tripal_library_teaser.tpl.php

@@ -0,0 +1,60 @@
+<?php
+
+$library  = $variables['node']->library;
+
+// expand the library to include the properties.
+$library = tripal_core_expand_chado_vars($library,'table','libraryprop');
+$library = tripal_core_expand_chado_vars($library,'field','libraryprop.value');
+
+?>
+<div id="tripal_library-base-box" class="tripal_library-info-box tripal-info-box">
+  <div class="tripal_library-info-box-title tripal-info-box-title">Library Details</div>
+  <div class="tripal_library-info-box-desc tripal-info-box-desc"></div>
+
+   <?php if(strcmp($library->is_obsolete,'t')==0){ ?>
+      <div class="tripal_library-obsolete">This library is obsolete</div>
+   <?php }?>
+   <table id="tripal_library-base-table" class="tripal_library-table tripal-table tripal-table-vert">
+      <tr class="tripal_library-table-even-row tripal-table-even-row">
+        <th nowrap>Unique Name</th>
+        <td><?php print $library->uniquename; ?></td>
+      </tr>
+      <tr class="tripal_library-table-odd-row tripal-table-odd-row">
+        <th>Internal ID</th>
+        <td><?php print $library->library_id; ?></td>
+      </tr>
+      <tr class="tripal_library-table-even-row tripal-table-even-row">
+        <th>Organism</th>
+        <td>
+          <?php if ($library->organism_id->nid) { 
+      	   print "<a href=\"".url("node/".$library->organism_id->nid)."\">".$library->organism_id->genus ." " . $library->organism_id->species ." (" .$library->organism_id->common_name .")</a>";      	 
+          } else { 
+            print $library->organism_id->genus ." " . $library->organism_id->species ." (" .$library->organism_id->common_name .")";
+          } ?>
+        </td>
+      </tr>      
+      <tr class="tripal_library-table-odd-row tripal-table-odd-row">
+        <th>Type</th>
+        <td><?php 
+            if ($library->type_id->name == 'cdna_library') {
+               print 'cDNA';
+            } else if ($library->type_id->name == 'bac_library') {
+               print 'BAC';
+            } else {
+               print $library->type_id->name;
+            }
+          ?>
+        </td>
+      </tr>
+      <tr class="tripal_library-table-even-row tripal-table-even-row">
+        <th>Description</th>
+        <td><?php
+           // right now we only have one property for libraries. So we can just
+           // refernece it directly.  If we had more than one property
+           // we would need to convert this to an if statment and loop
+           // until we found the right one.
+           print $library->libraryprop->value?>
+        </td>
+     	</tr>           	                                
+   </table>
+</div>

tripal_analysis_blast/theme/tripal_analysis_blast/tripal_analysis_blast_teaser.tpl.php

@@ -0,0 +1,53 @@
+<?php
+$node = $variables['node'];
+$analysis = $variables['node']->analysis;
+
+// the description is a text field so we want to expand that
+$analysis = tripal_core_expand_chado_vars($analysis,'field','analysis.description');
+
+
+?>
+<div id="tripal_analysis-base-box" class="tripal_analysis-info-box tripal-info-box">
+  <div class="tripal_analysis-info-box-title tripal-info-box-title">Details</div>
+   <table id="tripal_analysis-table-base" class="tripal_analysis-table tripal-table tripal-table-vert">
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th>Analysis Name</th>
+        <td><?php print $analysis->name; ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Software</th>
+        <td><?php 
+          print $analysis->program; 
+          if($analysis->programversion){
+             print " (" . $analysis->programversion . ")"; 
+          }
+          if($analysis->algorithm){
+             print ". " . $analysis->algorithm; 
+          }
+          ?>
+        </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Source</th>
+        <td><?php 
+          if($analysis->sourceuri){
+             print "<a href=\"$analysis->sourceuri\">$analysis->sourcename</a>"; 
+          } else {
+             print $analysis->sourcename; 
+          }
+          if($analysis->sourceversion){
+             print " (" . $analysis->sourceversion . ")"; 
+          }
+          ?>
+          </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Date performed</th>
+        <td><?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Description</th>
+        <td><?php print $analysis->description; ?></td>
+      </tr>             	                                
+   </table>   
+</div>

tripal_analysis_interpro/theme/tripal_analysis_interpro/tripal_analysis_interpro_teaser.tpl.php

@@ -0,0 +1,53 @@
+<?php
+$node = $variables['node'];
+$analysis = $variables['node']->analysis;
+
+// the description is a text field so we want to expand that
+$analysis = tripal_core_expand_chado_vars($analysis,'field','analysis.description');
+
+
+?>
+<div id="tripal_analysis-base-box" class="tripal_analysis-info-box tripal-info-box">
+  <div class="tripal_analysis-info-box-title tripal-info-box-title">Details</div>
+   <table id="tripal_analysis-table-base" class="tripal_analysis-table tripal-table tripal-table-vert">
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th>Analysis Name</th>
+        <td><?php print $analysis->name; ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Software</th>
+        <td><?php 
+          print $analysis->program; 
+          if($analysis->programversion){
+             print " (" . $analysis->programversion . ")"; 
+          }
+          if($analysis->algorithm){
+             print ". " . $analysis->algorithm; 
+          }
+          ?>
+        </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Source</th>
+        <td><?php 
+          if($analysis->sourceuri){
+             print "<a href=\"$analysis->sourceuri\">$analysis->sourcename</a>"; 
+          } else {
+             print $analysis->sourcename; 
+          }
+          if($analysis->sourceversion){
+             print " (" . $analysis->sourceversion . ")"; 
+          }
+          ?>
+          </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Date performed</th>
+        <td><?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Description</th>
+        <td><?php print $analysis->description; ?></td>
+      </tr>             	                                
+   </table>   
+</div>

tripal_analysis_kegg/theme/tripal_analysis_kegg/tripal_analysis_kegg_teaser.tpl.php

@@ -0,0 +1,53 @@
+<?php
+$node = $variables['node'];
+$analysis = $variables['node']->analysis;
+
+// the description is a text field so we want to expand that
+$analysis = tripal_core_expand_chado_vars($analysis,'field','analysis.description');
+
+
+?>
+<div id="tripal_analysis-base-box" class="tripal_analysis-info-box tripal-info-box">
+  <div class="tripal_analysis-info-box-title tripal-info-box-title">Details</div>
+   <table id="tripal_analysis-table-base" class="tripal_analysis-table tripal-table tripal-table-vert">
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th>Analysis Name</th>
+        <td><?php print $analysis->name; ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Software</th>
+        <td><?php 
+          print $analysis->program; 
+          if($analysis->programversion){
+             print " (" . $analysis->programversion . ")"; 
+          }
+          if($analysis->algorithm){
+             print ". " . $analysis->algorithm; 
+          }
+          ?>
+        </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Source</th>
+        <td><?php 
+          if($analysis->sourceuri){
+             print "<a href=\"$analysis->sourceuri\">$analysis->sourcename</a>"; 
+          } else {
+             print $analysis->sourcename; 
+          }
+          if($analysis->sourceversion){
+             print " (" . $analysis->sourceversion . ")"; 
+          }
+          ?>
+          </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Date performed</th>
+        <td><?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Description</th>
+        <td><?php print $analysis->description; ?></td>
+      </tr>             	                                
+   </table>   
+</div>

tripal_analysis_unigene/theme/tripal_analysis_unigene/tripal_analysis_unigene_teaser.tpl.php

@@ -0,0 +1,53 @@
+<?php
+$node = $variables['node'];
+$analysis = $variables['node']->analysis;
+
+// the description is a text field so we want to expand that
+$analysis = tripal_core_expand_chado_vars($analysis,'field','analysis.description');
+
+
+?>
+<div id="tripal_analysis-base-box" class="tripal_analysis-info-box tripal-info-box">
+  <div class="tripal_analysis-info-box-title tripal-info-box-title">Details</div>
+   <table id="tripal_analysis-table-base" class="tripal_analysis-table tripal-table tripal-table-vert">
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th>Analysis Name</th>
+        <td><?php print $analysis->name; ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Software</th>
+        <td><?php 
+          print $analysis->program; 
+          if($analysis->programversion){
+             print " (" . $analysis->programversion . ")"; 
+          }
+          if($analysis->algorithm){
+             print ". " . $analysis->algorithm; 
+          }
+          ?>
+        </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Source</th>
+        <td><?php 
+          if($analysis->sourceuri){
+             print "<a href=\"$analysis->sourceuri\">$analysis->sourcename</a>"; 
+          } else {
+             print $analysis->sourcename; 
+          }
+          if($analysis->sourceversion){
+             print " (" . $analysis->sourceversion . ")"; 
+          }
+          ?>
+          </td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-odd-row">
+        <th nowrap>Date performed</th>
+        <td><?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?></td>
+      </tr>
+      <tr class="tripal_analysis-table-odd-row tripal-table-even-row">
+        <th nowrap>Description</th>
+        <td><?php print $analysis->description; ?></td>
+      </tr>             	                                
+   </table>   
+</div>