Kaynağa Gözat

update the NCBI taxon db to not go to purl but to NCBI

bradfordcondon 6 yıl önce
ebeveyn
işleme
770a7c33a5

+ 1 - 1
tripal_chado/includes/tripal_chado.semweb.inc

@@ -2135,7 +2135,7 @@ function tripal_chado_populate_vocab_NCBITAXON() {
     'name' => 'NCBITaxon',
     'description' => 'NCBI organismal classification.',
     'url' => 'http://www.berkeleybop.org/ontologies/ncbitaxon/',
-    'urlprefix' => 'http://purl.obolibrary.org/obo/ncbitaxon#',
+    'urlprefix' => 'https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id={accession}',
   ));
   chado_insert_cv(
     'ncbitaxon',

+ 13 - 0
tripal_chado/tripal_chado.install

@@ -1854,3 +1854,16 @@ function tripal_chado_update_7336() {
     }
   }
 }
+
+/**
+ * Update the NCBITaxon DB entry.
+ */
+function tripal_chado_update_7337(){
+
+  chado_insert_db(array(
+    'name' => 'NCBITaxon',
+    'description' => 'NCBI organismal classification.',
+    'url' => 'http://www.berkeleybop.org/ontologies/ncbitaxon/',
+    'urlprefix' => 'https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id={accession}',
+  ));
+}