Added fields to default panel 'te_base' if they haven't been assigned to a region.

tripal_fields_layout/tripal_fields_layout.module

@@ -60,6 +60,9 @@ function tripal_fields_layout_form_field_ui_display_overview_form_alter(&$form,
     '#collapsed' => TRUE,
     '#group' => 'overview_vert_tabs'
   );
+
+  // Make sure our default panels are in the database.
+  _tripal_fields_layout_check_default_field_panels($bundle);
   
   // Add a Panel
   tripal_fields_layout_form_field_ui_display_overview_form_panel_add($form, $form_state);
@@ -70,9 +73,6 @@ function tripal_fields_layout_form_field_ui_display_overview_form_alter(&$form,
   // Configure Panels
   tripal_fields_layout_form_field_ui_display_overview_form_panel_configure($form, $bundle);
 
-  // Make sure our default panels are in the database.
-  _tripal_fields_layout_check_default_field_panels($bundle);
-
   // Now add each panel as a region.
   $form['fields']['#regions'] = array();
   $panels = db_select('tripal_panels', 'tp')
@@ -366,6 +366,41 @@ function _tripal_fields_layout_check_default_field_panels($bundle) {
       ))
       ->execute();
   }
+  // Now add all fields to the default region if they are not assigned
+  $panel_id = db_select('tripal_panels', 'tp')
+  ->fields('tp', array('panel_id'))
+  ->condition('name', 'te_base')
+  ->condition('bundle_id', $bundle->id)
+  ->execute()
+  ->fetchField();
+  $fields = db_select('field_config_instance', 'fci')
+    ->fields('fci', array('id'))
+    ->condition('entity_type', $bundle->type)
+    ->condition('bundle', $bundle->bundle)
+    ->execute();
+  foreach($fields AS $field) {
+    $penal_field_id = db_select('tripal_panel_fields', 'tpf')
+    ->fields('tpf', array('panel_field_id'))
+    ->condition('field_id', $field->id)
+    ->execute()
+    ->fetchField();
+    if ($penal_field_id) {
+      db_update('tripal_panel_fields')
+      ->fields(array(
+        'panel_id' => $panel_id,
+      ))
+      ->condition('panel_field_id', $penal_field_id)
+      ->execute();
+    }
+    else {
+      db_insert('tripal_panel_fields')
+      ->fields(array(
+        'panel_id' => $panel_id,
+        'field_id' => $field->id
+      ))
+      ->execute();
+    }
+  }
   // Next check if the hidden region is in the database. If not, add it.
   $te_base = db_select('tripal_panels', 'tp')
     ->fields('tp')