Updated class and id names of templates to be consistent

tripal_analysis/theme/tripal_analysis/tripal_analysis_base.tpl.php

@@ -2,7 +2,7 @@
 $analysis = $variables['node']->analysis;
 $analysis = tripal_core_expand_chado_vars($analysis,'field','analysis.description'); ?>
 
-<div class="tripal__analysis-info-box-desc tripal-info-box-desc"></div><?php 
+<div class="tripal__analysis-data-block-desc tripal-data-block-desc"></div><?php 
   
 // the $headers array is an array of fields to use as the colum headers. 
 // additional documentation can be found here 

tripal_analysis/theme/tripal_analysis/tripal_analysis_properties.tpl.php

@@ -6,7 +6,7 @@ $analysis = tripal_core_expand_chado_vars($analysis,'table', 'analysisprop', arr
 $properties = $analysis->analysisprop;
 
 if (count($properties) > 0) { ?>
-  <div class="tripal_analysis-info-box-desc tripal-info-box-desc">Additional information about this analysis:</div><?php
+  <div class="tripal_analysis-data-block-desc tripal-data-block-desc">Additional information about this analysis:</div><?php
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_bulk_loader/theme/node--tripal-bulk-loader.tpl.php

@@ -2,7 +2,7 @@
   <div class="tripal_bulk_loader-info-box-title tripal-info-box-title">
     <?php if ($teaser) { print l($node->title, 'node/'.$node->nid); } ?>
   </div>
-  <div class="tripal_bulk_loader-info-box-desc tripal-info-box-desc"></div>
+  <div class="tripal_bulk_loader-data-block-desc tripal-data-block-desc"></div>
 
   <table id="tripal_bulk_loader-base-table" class="tripal_bulk_loader-table tripal-table tripal-table-vert">
     <tr class="tripal_bulk_loader-table-odd-row tripal-table-odd-row">

tripal_bulk_loader/theme/tripal_bulk_loader_template.tpl.php

@@ -37,7 +37,7 @@
 
 <div id="tripal_bulk_loader-base-box" class="tripal_bulk_loader-info-box tripal-info-box">
   <div class="tripal_bulk_loader-info-box-title tripal-info-box-title">Template Description</div>
-  <div class="tripal_bulk_loader-info-box-desc tripal-info-box-desc"></div>
+  <div class="tripal_bulk_loader-data-block-desc tripal-data-block-desc"></div>
 
 <?php if (sizeof($constants)) { ?>
   <table id="tripal_bulk_loader-template_constant-table" class="tripal_bulk_loader-table tripal-table tripal-table-vert">

tripal_contact/theme/tripal_contact/tripal_contact_base.tpl.php

@@ -1,7 +1,7 @@
 <?php
 $contact = $variables['node']->contact; ?>
 
-<div class="tripal_contact-info-box-desc tripal-info-box-desc"></div> <?php
+<div class="tripal_contact-data-block-desc tripal-data-block-desc"></div> <?php
 
 // the $headers array is an array of fields to use as the colum headers. 
 // additional documentation can be found here 

tripal_contact/theme/tripal_contact/tripal_contact_properties.tpl.php

@@ -20,7 +20,7 @@ if ($contactprops) {
 
 
 if (count($properties) > 0) { ?>
-  <div class="tripal_contact-info-box-desc tripal-info-box-desc">Additional information about this contact:</div><?php
+  <div class="tripal_contact-data-block-desc tripal-data-block-desc">Additional information about this contact:</div><?php
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here
   // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7

tripal_contact/theme/tripal_contact/tripal_contact_publications.tpl.php

@@ -8,7 +8,7 @@ $pubauthor_contacts = $contact->pubauthor_contact;
 
 
 if (count($pubauthor_contacts) > 0) { ?>
-  <div class="tripal_pubauthor_contact-info-box-desc tripal-info-box-desc"></div> <?php 
+  <div class="tripal_pubauthor_contact-data-block-desc tripal-data-block-desc"></div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_contact/theme/tripal_contact/tripal_contact_relationships.tpl.php

@@ -23,7 +23,7 @@ $object_rels = $all_relationships['object'];
 $subject_rels = $all_relationships['subject'];
 
 if (count($object_rels) > 0 or count($subject_rels) > 0) { ?>
-  <div class="tripal_contact-info-box-desc tripal-info-box-desc"></div> <?php
+  <div class="tripal_contact-data-block-desc tripal-data-block-desc"></div> <?php
   // first add in the subject relationships.  
   foreach ($subject_rels as $rel_type => $rels){
     foreach ($rels as $obj_type => $objects){ ?>

tripal_core/theme/css/tripal.css

@@ -8,7 +8,7 @@
  * |-----------------------------------------------|
  * |  .tripal-contents                             |
  * | |-------------------------------------------| |
- * | | #tripal-contents-table                    | |
+ * | | .tripal-contents-table                    | |
  * | |        |                                  | |
  * | |        |                                  | |
  * | | TOC    |          Data                    | |
@@ -100,11 +100,11 @@
  * 'tripal-info-box-desc' 
  *
  * |-----------------------------------------------|
- * |  .tripal-info-box                             |
+ * |  .tripal-data-block                           |
  * | |-------------------------------------------| |
- * | | .tripal-info-box-title                    | |
+ * | | .tripal-data-block-title                  | |
  * | |-------------------------------------------| |
- * | | .tripal-info-box-desc                     | |
+ * | | .tripal-data-block-desc                   | |
  * | |-------------------------------------------| |
  * |                                               |
  * | (Block data goes here)                        |

tripal_feature/theme/tripal_feature/tripal_feature_alignments.tpl.php

@@ -58,7 +58,7 @@ $feature = $variables['node']->feature;
 $alignments = $feature->all_featurelocs;
 
 if(count($alignments) > 0){ ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The following features are aligned</div><?php
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">The following features are aligned</div><?php
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_feature/theme/tripal_feature/tripal_feature_analyses.tpl.php

@@ -6,7 +6,7 @@ $analyses = $feature->analysisfeature;
 
 // don't show this page if there are no analyses
 if (count($analyses) > 0) { ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">This <?php print $feature->type_id->name ?> is derived from or has results from the following analyses</div> <?php
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">This <?php print $feature->type_id->name ?> is derived from or has results from the following analyses</div> <?php
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_feature/theme/tripal_feature/tripal_feature_base.tpl.php

@@ -1,7 +1,7 @@
 <?php
 $feature  = $variables['node']->feature;  ?>
 
-<div class="tripal_feature-info-box-desc tripal-info-box-desc"></div> <?php
+<div class="tripal_feature-data-block-desc tripal-data-block-desc"></div> <?php
  
 // the $headers array is an array of fields to use as the colum headers. 
 // additional documentation can be found here 

tripal_feature/theme/tripal_feature/tripal_feature_featurepos.tpl.php

@@ -39,7 +39,7 @@ $total_records = $_SESSION['chado_pager'][$featurepos_pager_id]['total_records']
 
 
 if(count($map_positions) > 0){ ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">This feature is contained in the following <?php print number_format($total_records) ?> map(s):</div><?php 
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">This feature is contained in the following <?php print number_format($total_records) ?> map(s):</div><?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_feature/theme/tripal_feature/tripal_feature_publications.tpl.php

@@ -8,7 +8,7 @@ $feature_pubs = $feature->feature_pub;
 
 
 if (count($feature_pubs) > 0) { ?>
-  <div class="tripal_feature_pub-info-box-desc tripal-info-box-desc"></div> <?php 
+  <div class="tripal_feature_pub-data-block-desc tripal-data-block-desc"></div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_feature/theme/tripal_feature/tripal_feature_references.tpl.php

@@ -26,7 +26,7 @@ if (count($feature_dbxrefs) > 0 ) {
 
 
 if(count($references) > 0){ ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">External references for this <?php print $feature->type_id->name ?></div><?php
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">External references for this <?php print $feature->type_id->name ?></div><?php
    
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_feature/theme/tripal_feature/tripal_feature_relationships.tpl.php

@@ -23,7 +23,7 @@ $object_rels = $all_relationships['object'];
 $subject_rels = $all_relationships['subject'];
 
 if (count($object_rels) > 0 or count($subject_rels) > 0) { ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc"></div> <?php
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc"></div> <?php
   
   // first add in the subject relationships.  
   foreach ($subject_rels as $rel_type => $rels){

tripal_feature/theme/tripal_feature/tripal_feature_sequence.tpl.php

@@ -39,7 +39,7 @@ $feature = $variables['node']->feature;
 $featureloc_sequences = $feature->featureloc_sequences;
 
 if ($residues or count($featureloc_sequences) > 0) { ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc"></div> <?php
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc"></div> <?php
   
   // show the alignment sequences first as they are colored with child features
   if(count($featureloc_sequences) > 0){

tripal_feature/theme/tripal_feature/tripal_feature_synonyms.tpl.php

@@ -8,7 +8,7 @@ $feature = tripal_core_expand_chado_vars($feature, 'table', 'feature_synonym', $
 $synonyms = $feature->feature_synonym;
 
 if(count($synonyms) > 0){ ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The feature '<?php print $feature->name ?>' has the following synonyms</div><?php
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">The feature '<?php print $feature->name ?>' has the following synonyms</div><?php
   
   // the $headers array is an array of fields to use as the colum headers. 
   // additional documentation can be found here 

tripal_feature/theme/tripal_feature/tripal_feature_terms.tpl.php

@@ -15,7 +15,7 @@ if ($terms) {
 }
 
 if (count($s_terms) > 0) { ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The following terms have been associated with this <?php print $node->feature->type_id->name ?>:</div>  <?php
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">The following terms have been associated with this <?php print $node->feature->type_id->name ?>:</div>  <?php
   
   // iterate through each term
   $i = 0;

tripal_feature/theme/tripal_organism/tripal_organism_feature_browser.tpl.php

@@ -57,7 +57,7 @@ foreach ($results as $result) {
 // only show this block if it is enabled
 if ($enabled) { 
   if (count($features) > 0) { ?>
-    <div class="tripal_organism-info-box-desc tripal-info-box-desc">The following browser provides a quick view for new visitors.  Use the searching mechanism to find specific features.</div> <?php
+    <div class="tripal_organism-data-block-desc tripal-data-block-desc">The following browser provides a quick view for new visitors.  Use the searching mechanism to find specific features.</div> <?php
     
     // the $headers array is an array of fields to use as the colum headers.
     // additional documentation can be found here

tripal_feature/theme/tripal_organism/tripal_organism_feature_counts.tpl.php

@@ -13,7 +13,7 @@ if(property_exists($organism, 'feature_counts')) {
 // only show this block if it is enabled
 if ($enabled) { 
   if (count($types) > 0){ ?>
-    <div class="tripal_organism-info-box-desc tripal-info-box-desc">The following data types are currently present for this organism</div> <?php
+    <div class="tripal_organism-data-block-desc tripal-data-block-desc">The following data types are currently present for this organism</div> <?php
     // let admins know they can customize the terms that appear in the list
     print theme('tripal_admin_message', array('message' => "
       Administrators, you can customize the types of terms that appear in this report by 
@@ -48,7 +48,7 @@ if ($enabled) {
    } 
    else { 
     if (user_access('access administration pages')) { ?>
-      <div class="tripal_organism-info-box-desc tripal-info-box-desc">The following data types are currently present for this organism</div> <?php 
+      <div class="tripal_organism-data-block-desc tripal-data-block-desc">The following data types are currently present for this organism</div> <?php 
       print theme('tripal_admin_message', array('message' => "
          Administrators, to view the feature type report:
          <ul>

tripal_featuremap/theme/tripal_featuremap/tripal_featuremap.base.tpl.php → tripal_featuremap/theme/tripal_featuremap/tripal_featuremap_base.tpl.php

@@ -5,7 +5,7 @@ $featuremap  = $variables['node']->featuremap;
 // expand the description field
 $featuremap = tripal_core_expand_chado_vars($featuremap, 'field', 'featuremap.description'); ?>
 
-<div class="tripal_featuremap-info-box-desc tripal-info-box-desc"></div> <?php 
+<div class="tripal_featuremap-data-block-desc tripal-data-block-desc"></div> <?php 
 
 // the $headers array is an array of fields to use as the colum headers. 
 // additional documentation can be found here 

tripal_featuremap/theme/tripal_featuremap/tripal_featuremap.featurepos.tpl.php → tripal_featuremap/theme/tripal_featuremap/tripal_featuremap_featurepos.tpl.php

@@ -38,7 +38,7 @@ $total_features = $_SESSION['chado_pager'][$featurepos_pager_id]['total_records'
 
 
 if(count($feature_positions) > 0){ ?>
-  <div class="tripal_featuremap-info-box-desc tripal-info-box-desc">This map contains <?php print number_format($total_features) ?> features:</div> <?php 
+  <div class="tripal_featuremap-data-block-desc tripal-data-block-desc">This map contains <?php print number_format($total_features) ?> features:</div> <?php 
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_featuremap/theme/tripal_featuremap/tripal_featuremap.publication.tpl.php → tripal_featuremap/theme/tripal_featuremap/tripal_featuremap_publication.tpl.php

@@ -8,7 +8,7 @@ $featuremap_pubs = $featuremap->featuremap_pub;
 
 
 if (count($featuremap_pubs) > 0) { ?>
-  <div class="tripal_featuremap_pub-info-box-desc tripal-info-box-desc"></div> <?php 
+  <div class="tripal_featuremap_pub-data-block-desc tripal-data-block-desc"></div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_featuremap/theme/tripal_featuremap/tripal_featuremap.references.tpl.php → tripal_featuremap/theme/tripal_featuremap/tripal_featuremap_references.tpl.php

@@ -14,7 +14,7 @@ if (count($featuremap_dbxrefs) > 0 ) {
 
 
 if(count($references) > 0){ ?>
-  <div class="tripal_featuremap-info-box-desc tripal-info-box-desc">External references for this map</div><?php
+  <div class="tripal_featuremap-data-block-desc tripal-data-block-desc">External references for this map</div><?php
    
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_featuremap/tripal_featuremap.module

@@ -179,36 +179,36 @@ function tripal_featuremap_theme($existing, $type, $theme, $path) {
     ),
     'tripal_featuremap_base' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_featuremap.base',
+      'template' => 'tripal_featuremap_base',
       'path' => "$path/theme/tripal_featuremap",
     ),
     'tripal_featuremap_properties' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_featuremap.properties',
+      'template' => 'tripal_featuremap_properties',
       'path' => "$path/theme/tripal_featuremap",
     ),
     'tripal_featuremap_featurepos' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_featuremap.featurepos',
+      'template' => 'tripal_featuremap_featurepos',
       'path' => "$path/theme/tripal_featuremap",
     ),
     'tripal_featuremap_publication' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_featuremap.publication',
+      'template' => 'tripal_featuremap_publication',
       'path' => "$path/theme/tripal_featuremap",
     ),
     'tripal_featuremap_references' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_featuremap.references',
+      'template' => 'tripal_featuremap_references',
       'path' => "$path/theme/tripal_featuremap",
     ),
     'tripal_featuremap_help' => array(
-      'template' => 'tripal_featuremap.help',
+      'template' => 'tripal_featuremap_help',
       'variables' =>  array(NULL),
       'path' => "$path/theme",
     ),
     'tripal_featuremap_teaser' => array(
-      'template' => 'tripal_featuremap.teaser',
+      'template' => 'tripal_featuremap_teaser',
       'variables' =>  array(NULL),
       'path' => "$path/theme/tripal_featuremap",
     ),

tripal_genetic/theme/tripal_feature/tripal_feature.genotypes.tpl.php → tripal_genetic/theme/tripal_feature/tripal_feature_genotypes.tpl.php

@@ -44,7 +44,7 @@ $total_records = $_SESSION['chado_pager'][$feature_pager_id]['total_records'];
 
 // now iterate through the feature genotypes and print a paged table.
 if (count($feature_genotypes) > 0) {?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">This following <?php print number_format($total_records) ?> genotype(s) have been recorded for this feature.</div><?php 
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">This following <?php print number_format($total_records) ?> genotype(s) have been recorded for this feature.</div><?php 
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_genetic/theme/tripal_stock/tripal_stock.genotypes.tpl.php → tripal_genetic/theme/tripal_stock/tripal_stock_genotypes.tpl.php

@@ -34,7 +34,7 @@ $total_records = $_SESSION['chado_pager'][$stock_pager_id]['total_records'];
 
 // now iterate through the stock genotypes and print a paged table.
 if (count($stock_genotypes) > 0) {?>
-  <div class="tripal_stock-info-box-desc tripal-info-box-desc">The following <?php print number_format($total_records) ?> genotype(s) have been recorded for this stock.</div> <?php
+  <div class="tripal_stock-data-block-desc tripal-data-block-desc">The following <?php print number_format($total_records) ?> genotype(s) have been recorded for this stock.</div> <?php
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_genetic/tripal_genetic.module

@@ -91,16 +91,16 @@ function tripal_genetic_theme($existing, $type, $theme, $path) {
   $items = array(
     'tripal_feature_genotypes' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_feature.genotypes',
+      'template' => 'tripal_feature_genotypes',
       'path' => "$path/theme/tripal_feature",
     ),
     'tripal_stock_genotypes' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_stock.genotypes',
+      'template' => 'tripal_stock_genotypes',
       'path' => "$path/theme/tripal_stock",
     ),
     'tripal_genetic_help' => array(
-      'template' => 'tripal_genetic.help',
+      'template' => 'tripal_genetic_help',
       'variables' =>  array(NULL),
       'path' => "$path/theme/",
     ),

tripal_library/theme/tripal_feature/tripal_feature.libraries.tpl.php → tripal_library/theme/tripal_feature/tripal_feature_libraries.tpl.php

@@ -9,7 +9,7 @@ $library_features = $feature->library_feature;
 
 
 if (count($library_features) > 0) {?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The following libraries are associated with this feature.</div> <?php 
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">The following libraries are associated with this feature.</div> <?php 
   
   // the $headers array is an array of fields to use as the colum headers. 
   // additional documentation can be found here 

tripal_library/theme/tripal_library/tripal_library.base.tpl.php → tripal_library/theme/tripal_library/tripal_library_base.tpl.php

@@ -6,7 +6,7 @@ $library  = $variables['node']->library;
 $libprop = tripal_library_get_property($library->library_id, 'Library Description');
 $description = $libprop->value; ?>
 
-<div class="tripal_library-info-box-desc tripal-info-box-desc"></div> <?php 
+<div class="tripal_library-data-block-desc tripal-data-block-desc"></div> <?php 
 
 // the $headers array is an array of fields to use as the colum headers. 
 // additional documentation can be found here 

tripal_library/theme/tripal_library/tripal_library.publications.tpl.php → tripal_library/theme/tripal_library/tripal_library_publications.tpl.php

@@ -8,7 +8,7 @@ $library_pubs = $library->library_pub;
 
 
 if (count($library_pubs) > 0) { ?>
-  <div class="tripal_library_pub-info-box-desc tripal-info-box-desc"></div> <?php 
+  <div class="tripal_library_pub-data-block-desc tripal-data-block-desc"></div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_library/theme/tripal_library/tripal_library.references.tpl.php → tripal_library/theme/tripal_library/tripal_library_references.tpl.php

@@ -14,7 +14,7 @@ if (count($library_dbxrefs) > 0 ) {
 
 
 if(count($references) > 0){ ?>
-  <div class="tripal_library-info-box-desc tripal-info-box-desc">External references for this <?php print $library->type_id->name ?></div><?php
+  <div class="tripal_library-data-block-desc tripal-data-block-desc">External references for this <?php print $library->type_id->name ?></div><?php
    
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_library/theme/tripal_library/tripal_library.synonyms.tpl.php → tripal_library/theme/tripal_library/tripal_library_synonyms.tpl.php

@@ -8,7 +8,7 @@ $library = tripal_core_expand_chado_vars($library, 'table', 'library_synonym', $
 $synonyms = $library->library_synonym;
 
 if(count($synonyms) > 0){ ?>
-  <div class="tripal_library-info-box-desc tripal-info-box-desc">The library '<?php print $library->name ?>' has the following synonyms</div><?php
+  <div class="tripal_library-data-block-desc tripal-data-block-desc">The library '<?php print $library->name ?>' has the following synonyms</div><?php
   
   // the $headers array is an array of fields to use as the colum headers. 
   // additional documentation can be found here 

tripal_library/theme/tripal_library/tripal_library.terms.tpl.php → tripal_library/theme/tripal_library/tripal_library_terms.tpl.php

@@ -13,7 +13,7 @@ foreach ($terms as $term) {
 }
 
 if (count($s_terms) > 0) { ?>
-  <div class="tripal_library-info-box-desc tripal-info-box-desc">The following terms have been associated with this <?php print $node->library->type_id->name ?>:</div>  <?php
+  <div class="tripal_library-data-block-desc tripal-data-block-desc">The following terms have been associated with this <?php print $node->library->type_id->name ?>:</div>  <?php
   
   // iterate through each term
   $i = 0;

tripal_library/theme/tripal_organism/tripal_organism.libraries.tpl.php → tripal_library/theme/tripal_organism/tripal_organism_libraries.tpl.php

@@ -9,7 +9,7 @@ $libraries = $organism->library;
 
 
 if (count($libraries) > 0) {?>
-  <div class="tripal_organism-info-box-desc tripal-info-box-desc">The following libraries are associated with this organism.</div> <?php 
+  <div class="tripal_organism-data-block-desc tripal-data-block-desc">The following libraries are associated with this organism.</div> <?php 
   
   // the $headers array is an array of fields to use as the colum headers. 
   // additional documentation can be found here 

tripal_library/tripal_library.module

@@ -142,36 +142,36 @@ function tripal_library_theme($existing, $type, $theme, $path) {
     // tripal_library templates
     'tripal_library_base' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_library.base',
+      'template' => 'tripal_library_base',
       'path' => "$path/theme/tripal_library",
     ),
     'tripal_library_properties' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_library.properties',
+      'template' => 'tripal_library_properties',
       'path' => "$path/theme/tripal_library",
     ),
     'tripal_library_publications' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_library.publications',
+      'template' => 'tripal_library_publications',
       'path' => "$path/theme/tripal_library",
     ),
     'tripal_library_references' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_library.references',
+      'template' => 'tripal_library_references',
       'path' => "$path/theme/tripal_library",
     ),
     'tripal_library_synonyms' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_library.synonyms',
+      'template' => 'tripal_library_synonyms',
       'path' => "$path/theme/tripal_library",
     ),
     'tripal_library_terms' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_library.terms',
+      'template' => 'tripal_library_terms',
       'path' => "$path/theme/tripal_library",
     ),
     'tripal_library_help' => array(
-      'template' => 'tripal_library.help',
+      'template' => 'tripal_library_help',
       'variables' =>  array(NULL),
       'path' => "$path/theme",
     ),
@@ -179,21 +179,21 @@ function tripal_library_theme($existing, $type, $theme, $path) {
     // teaser
     'tripal_library_teaser' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_library.teaser',
+      'template' => 'tripal_library_teaser',
       'path' => "$path/theme/tripal_library",
     ),
     
     // tripal_organism templates
     'tripal_organism_libraries' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_organism.libraries',
+      'template' => 'tripal_organism_libraries',
       'path' => "$path/theme/tripal_organism",
     ),
     
     // tripal_feature templates
     'tripal_feature_libraries' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_feature.libraries',
+      'template' => 'tripal_feature_libraries',
       'path' => "$path/theme/tripal_feature",
     ),
     

tripal_natural_diversity/theme/tripal_feature/tripal_feature.nd_genotypes.tpl.php → tripal_natural_diversity/theme/tripal_feature/tripal_feature_nd_genotypes.tpl.php

@@ -67,7 +67,7 @@ $total_records = $_SESSION['chado_pager'][$feature_pager_id]['total_records'];
 
 // now iterate through the feature genotypes and print a paged table.
 if (count($feature_genotypes) > 0) { ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">This following <?php print number_format($total_records) ?> genotype(s) have been recorded for this feature.</div> <?php 
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">This following <?php print number_format($total_records) ?> genotype(s) have been recorded for this feature.</div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_natural_diversity/theme/tripal_stock/tripal_stock.nd_genotypes.tpl.php → tripal_natural_diversity/theme/tripal_stock/tripal_stock_nd_genotypes.tpl.php

@@ -102,7 +102,7 @@ $total_records = $_SESSION['chado_pager'][$stock_pager_id]['total_records'];
 
 // now iterate through the feature genotypes and print a paged table.
 if (count($genotypes) > 0) { ?>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The following <?php print number_format($total_records) ?> genotype(s) have been recorded for this feature.</div> <?php 
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">The following <?php print number_format($total_records) ?> genotype(s) have been recorded for this feature.</div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_natural_diversity/theme/tripal_stock/tripal_stock.nd_phenotypes.tpl.php → tripal_natural_diversity/theme/tripal_stock/tripal_stock_nd_phenotypes.tpl.php

@@ -66,7 +66,7 @@ if (count($nd_experiment_stocks) > 0) {
 }
 
 if (count($phenotypes) > 0) {?>
-  <div class="tripal_stock-info-box-desc tripal-info-box-desc">This following phenotypes have been recorded for this stock.</div><?php 
+  <div class="tripal_stock-data-block-desc tripal-data-block-desc">This following phenotypes have been recorded for this stock.</div><?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_natural_diversity/tripal_natural_diversity.module

@@ -92,22 +92,22 @@ function tripal_natural_diversity_theme($existing, $type, $theme, $path) {
     // tripal_feature templates
     'tripal_feature_nd_genotypes' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_feature.nd_genotypes',
+      'template' => 'tripal_feature_nd_genotypes',
       'path' => "$path/theme/tripal_feature",
     ),
     // tripal_stock templates
     'tripal_stock_nd_genotypes' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_stock.nd_genotypes',
+      'template' => 'tripal_stock_nd_genotypes',
       'path' => "$path/theme/tripal_stock",
     ),
     'tripal_stock_nd_phenotypes' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_stock.nd_phenotypes',
+      'template' => 'tripal_stock_nd_phenotypes',
       'path' => "$path/theme/tripal_stock",
     ),
     'tripal_natural_diversity_help' => array(
-      'template' => 'tripal_natural_diversity.help',
+      'template' => 'tripal_natural_diversity_help',
       'variables' =>  array(NULL),
       'path' => "$path/theme",
     ),

tripal_organism/theme/tripal_organism/tripal_organism_base.tpl.php

@@ -3,7 +3,7 @@
 $organism  = $variables['node']->organism;
 $organism = tripal_core_expand_chado_vars($organism,'field','organism.comment'); ?>
 
-<div class="tripal_organism-info-box-desc tripal-info-box-desc"></div><?php
+<div class="tripal_organism-data-block-desc tripal-data-block-desc"></div><?php
 
 // generate the image tag
 $image = '';

tripal_organism/theme/tripal_organism/tripal_organism_references.tpl.php

@@ -20,7 +20,7 @@ if (count($organism_dbxrefs) > 0 ) {
 
 
 if(count($references) > 0){ ?>
-  <div class="tripal_organism-info-box-desc tripal-info-box-desc">External references for this organism</div><?php
+  <div class="tripal_organism-data-block-desc tripal-data-block-desc">External references for this organism</div><?php
    
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_phenotype/theme/tripal_feature/tripal_feature.phenotypes.tpl.php → tripal_phenotype/theme/tripal_feature/tripal_feature_phenotypes.tpl.php

@@ -17,7 +17,7 @@ $feature_phenotypes = $feature->feature_phenotype;
 
 if(count($feature_phenotypes) > 0){ ?>
   
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The feature is associated with the following phenotypes</div><?php
+  <div class="tripal_feature-data-block-desc tripal-data-block-desc">The feature is associated with the following phenotypes</div><?php
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_phenotype/tripal_phenotype.module

@@ -75,11 +75,11 @@ function tripal_phenotype_theme($existing, $type, $theme, $path) {
   $items = array(
     'tripal_feature_phenotypes' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_feature.phenotypes',
+      'template' => 'tripal_feature_phenotypes',
       'path' => "$path/theme/tripal_feature",
     ),
     'tripal_phenotype_help' => array(
-      'template' => 'tripal_phenotype.help',
+      'template' => 'tripal_phenotype_help',
       'variables' =>  array(NULL),
       'path' => "$path/theme",
     ),

tripal_project/theme/tripal_project/tripal_project.base.tpl.php → tripal_project/theme/tripal_project/tripal_project_base.tpl.php

@@ -22,7 +22,7 @@ else {
   $description = $projectprop->value;
 } ?>
 
-<div class="tripal_project-info-box-desc tripal-info-box-desc"></div><?php 
+<div class="tripal_project-data-block-desc tripal-data-block-desc"></div><?php 
 
 // the $headers array is an array of fields to use as the colum headers. 
 // additional documentation can be found here 

tripal_project/theme/tripal_project/tripal_project.contact.tpl.php → tripal_project/theme/tripal_project/tripal_project_contact.tpl.php

@@ -7,7 +7,7 @@ $project = tripal_core_expand_chado_vars($project,'table','project_contact', arr
 $project_contacts = $project->project_contact;
 
 if (count($project_contacts) > 0) { ?>
-  <div class="tripal_project-info-box-desc tripal-info-box-desc">The following indivuals or groups have particpated in development or execution of this project</div><?php     
+  <div class="tripal_project-data-block-desc tripal-data-block-desc">The following indivuals or groups have particpated in development or execution of this project</div><?php     
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_project/theme/tripal_project/tripal_project.properties.tpl.php → tripal_project/theme/tripal_project/tripal_project_properties.tpl.php

@@ -20,7 +20,7 @@ if ($projectprops) {
 
 
 if (count($properties) > 0) { ?>
-  <div class="tripal_project-info-box-desc tripal-info-box-desc">Additional information about this project:</div><?php
+  <div class="tripal_project-data-block-desc tripal-data-block-desc">Additional information about this project:</div><?php
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_project/theme/tripal_project/tripal_project.publications.tpl.php → tripal_project/theme/tripal_project/tripal_project_publications.tpl.php

@@ -8,7 +8,7 @@ $project_pubs = $project->project_pub;
 
 
 if (count($project_pubs) > 0) { ?>
-  <div class="tripal_project_pub-info-box-desc tripal-info-box-desc"></div> <?php 
+  <div class="tripal_project_pub-data-block-desc tripal-data-block-desc"></div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_project/theme/tripal_project/tripal_project.relationships.tpl.php → tripal_project/theme/tripal_project/tripal_project_relationships.tpl.php

@@ -23,7 +23,7 @@ $object_rels = $all_relationships['object'];
 $subject_rels = $all_relationships['subject'];
 
 if (count($object_rels) > 0 or count($subject_rels) > 0) { ?>
-  <div class="tripal_project-info-box-desc tripal-info-box-desc">This project is related to the following other projects:</div> <?php
+  <div class="tripal_project-data-block-desc tripal-data-block-desc">This project is related to the following other projects:</div> <?php
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_project/tripal_project.module

@@ -147,36 +147,36 @@ function tripal_project_theme($existing, $type, $theme, $path) {
     ),
     'tripal_project_base' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_project.base',
+      'template' => 'tripal_project_base',
       'path' => "$path/theme/tripal_project",
     ),
     'tripal_project_contact' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_project.contact',
+      'template' => 'tripal_project_contact',
       'path' => "$path/theme/tripal_project",
     ),
     'tripal_project_properties' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_project.properties',
+      'template' => 'tripal_project_properties',
       'path' => "$path/theme/tripal_project",
     ),
     'tripal_project_publications' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_project.publications',
+      'template' => 'tripal_project_publications',
       'path' => "$path/theme/tripal_project",
     ),
     'tripal_project_relationships' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_project.relationships',
+      'template' => 'tripal_project_relationships',
       'path' => "$path/theme/tripal_project",
     ),
     'tripal_project_teaser' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_project.teaser',
+      'template' => 'tripal_project_teaser',
       'path' => "$path/theme/tripal_project",
     ),
     'tripal_project_help' => array(
-      'variables' => 'tripal_project.help',
+      'variables' => 'tripal_project_help',
       'variables' =>  array(NULL),
       'path' => "$path/theme",
     ),

tripal_pub/theme/tripal_pub/tripal_pub_authors.tpl.php

@@ -30,7 +30,7 @@ if (count($authors) > 0) {
 }
 
 if ($has_contacts) { ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc">Additional information about authors:</div> <?php
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc">Additional information about authors:</div> <?php
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here
   // https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7

tripal_pub/theme/tripal_pub/tripal_pub_base.tpl.php

@@ -84,7 +84,7 @@ if (count($urls) > 0) {
   $url = $urls[0]->value; 
 }?>
 
-<div class="tripal_pub-info-box-desc tripal-info-box-desc"></div> <?php 
+<div class="tripal_pub-data-block-desc tripal-data-block-desc"></div> <?php 
 
 // to simplify the template, we have a subdirectory named 'pub_types'.  This directory
 // should have include files each specific to a publication type. If the type is 

tripal_pub/theme/tripal_pub/tripal_pub_featuremaps.tpl.php

@@ -32,7 +32,7 @@ if (count($featuremap_pubs) > 0 ) {
 $total_records = $_SESSION['chado_pager'][$element]['total_records'];
 
 if(count($featuremaps) > 0){ ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc">This publication contains information about <?php print number_format($total_records) ?> maps:</div> <?php 
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc">This publication contains information about <?php print number_format($total_records) ?> maps:</div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_pub/theme/tripal_pub/tripal_pub_features.tpl.php

@@ -32,7 +32,7 @@ if (count($feature_pubs) > 0 ) {
 $total_records = $_SESSION['chado_pager'][$element]['total_records'];
 
 if(count($features) > 0){ ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc">This publication contains information about <?php print number_format($total_records) ?> features:</div> <?php 
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc">This publication contains information about <?php print number_format($total_records) ?> features:</div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_pub/theme/tripal_pub/tripal_pub_libraries.tpl.php

@@ -32,7 +32,7 @@ if (count($library_pubs) > 0 ) {
 $total_records = $_SESSION['chado_pager'][$element]['total_records'];
 
 if(count($libraries) > 0){ ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc">This publication contains information about <?php print number_format($total_records) ?> libraries:</div> <?php 
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc">This publication contains information about <?php print number_format($total_records) ?> libraries:</div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_pub/theme/tripal_pub/tripal_pub_projects.tpl.php

@@ -32,7 +32,7 @@ if (count($project_pubs) > 0 ) {
 $total_records = $_SESSION['chado_pager'][$element]['total_records'];
 
 if(count($projects) > 0){ ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc">This publication contains information about <?php print number_format($total_records) ?> projects:</div> <?php 
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc">This publication contains information about <?php print number_format($total_records) ?> projects:</div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_pub/theme/tripal_pub/tripal_pub_properties.tpl.php

@@ -27,7 +27,7 @@ if (is_array($pubprops)) {
 $keywords = array(); 
 
 if (count($properties)) { ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc">Additional details for this publication include:</div> <?php 
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc">Additional details for this publication include:</div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_pub/theme/tripal_pub/tripal_pub_references.tpl.php

@@ -15,7 +15,7 @@ if (count($pub_dbxrefs) > 0 ) {
 }
 
 if(count($references) > 0){ ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc">This publication is also available in the following databases:</div><?php 
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc">This publication is also available in the following databases:</div><?php 
   
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_pub/theme/tripal_pub/tripal_pub_relationships.tpl.php

@@ -23,7 +23,7 @@ $object_rels = $all_relationships['object'];
 $subject_rels = $all_relationships['subject'];
 
 if (count($object_rels) > 0 or count($subject_rels) > 0) { ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc"></div> <?php
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc"></div> <?php
   
   // first add in the subject relationships.  
   foreach ($subject_rels as $rel_type => $rels){

tripal_pub/theme/tripal_pub/tripal_pub_stocks.tpl.php

@@ -32,7 +32,7 @@ if (count($stock_pubs) > 0 ) {
 $total_records = $_SESSION['chado_pager'][$element]['total_records'];
 
 if(count($stocks) > 0){ ?>
-  <div class="tripal_pub-info-box-desc tripal-info-box-desc">This publication contains information about <?php print number_format($total_records) ?> stocks:</div> <?php 
+  <div class="tripal_pub-data-block-desc tripal-data-block-desc">This publication contains information about <?php print number_format($total_records) ?> stocks:</div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_stock/theme/tripal_organism/tripal_organism_stocks.tpl.php

@@ -28,7 +28,7 @@ $total_records = $_SESSION['chado_pager'][$pager_id]['total_records'];
 
  
 if (count($stocks) > 0) { ?>
-  <div class="tripal_organism-info-box-desc tripal-info-box-desc">This organism is associated with <?php print number_format($total_records) ?> stock(s):</div> <?php 
+  <div class="tripal_organism-data-block-desc tripal-data-block-desc">This organism is associated with <?php print number_format($total_records) ?> stock(s):</div> <?php 
   
   // the $headers array is an array of fields to use as the colum headers. 
   // additional documentation can be found here 

tripal_stock/theme/tripal_stock/tripal_stock_base.tpl.php

@@ -7,7 +7,7 @@ $main_db_reference = $stock->dbxref_id;
 $stock = tripal_core_expand_chado_vars($stock, 'field', 'stock.description');
 $stock = tripal_core_expand_chado_vars($stock, 'field', 'stock.uniquename'); ?>
 
-<div class="tripal_stock-info-box-desc tripal-info-box-desc"></div> <?php  
+<div class="tripal_stock-data-block-desc tripal-data-block-desc"></div> <?php  
 
 // the $headers array is an array of fields to use as the colum headers. 
 // additional documentation can be found here 

tripal_stock/theme/tripal_stock/tripal_stock_collections.tpl.php

@@ -7,7 +7,7 @@ $stock = tripal_core_expand_chado_vars($stock, 'table', 'stockcollection_stock',
 $collections = $stock->stockcollection_stock;
 
 if (count($collections) > 0) {?>
-  <div class="tripal_stock-info-box-desc tripal-info-box-desc">This stock is found in the following collections.</div> <?php 
+  <div class="tripal_stock-data-block-desc tripal-data-block-desc">This stock is found in the following collections.</div> <?php 
   
   // the $headers array is an array of fields to use as the colum headers. 
   // additional documentation can be found here 

tripal_stock/theme/tripal_stock/tripal_stock.publications.tpl.php → tripal_stock/theme/tripal_stock/tripal_stock_publications.tpl.php

@@ -8,7 +8,7 @@ $stock_pubs = $stock->stock_pub;
 
 
 if (count($stock_pubs) > 0) { ?>
-  <div class="tripal_stock_pub-info-box-desc tripal-info-box-desc"></div> <?php 
+  <div class="tripal_stock_pub-data-block-desc tripal-data-block-desc"></div> <?php 
 
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_stock/theme/tripal_stock/tripal_stock_references.tpl.php

@@ -26,7 +26,7 @@ if (count($stock_dbxrefs) > 0 ) {
 
 
 if(count($references) > 0){ ?>
-  <div class="tripal_stock-info-box-desc tripal-info-box-desc">External references for this <?php print $stock->type_id->name ?></div><?php
+  <div class="tripal_stock-data-block-desc tripal-data-block-desc">External references for this <?php print $stock->type_id->name ?></div><?php
    
   // the $headers array is an array of fields to use as the colum headers.
   // additional documentation can be found here

tripal_stock/theme/tripal_stock/tripal_stock_relationships.tpl.php

@@ -23,7 +23,7 @@ $object_rels = $all_relationships['object'];
 $subject_rels = $all_relationships['subject'];
 
 if (count($object_rels) > 0 or count($subject_rels) > 0) { ?>
-  <div class="tripal_stock-info-box-desc tripal-info-box-desc"></div> <?php
+  <div class="tripal_stock-data-block-desc tripal-data-block-desc"></div> <?php
   
   // first add in the subject relationships.  
   foreach ($subject_rels as $rel_type => $rels){

tripal_stock/theme/tripal_stock/tripal_stock_synonyms.tpl.php

@@ -20,7 +20,7 @@ if ($stockprops) {
 }
 
 if(count($synonyms) > 0){ ?>
-  <div class="tripal_stock-info-box-desc tripal-info-box-desc">The stock '<?php print $stock->name ?>' has the following synonyms</div> <?php
+  <div class="tripal_stock-data-block-desc tripal-data-block-desc">The stock '<?php print $stock->name ?>' has the following synonyms</div> <?php
   
   // the $headers array is an array of fields to use as the colum headers. 
   // additional documentation can be found here 

tripal_stock/tripal_stock.module

@@ -265,7 +265,7 @@ function tripal_stock_theme($existing, $type, $theme, $path) {
     ),
     'tripal_stock_publications' => array(
       'variables' => array('node' => NULL),
-      'template' => 'tripal_stock.publications',
+      'template' => 'tripal_stock_publications',
       'path' => "$path/theme/tripal_stock",
     ),
     'tripal_stock_references' => array(