Added basic views integration for Tripal Vocab, Term and Entity Entities.

tripal/includes/TripalEntityViewsController.inc

@@ -0,0 +1,26 @@
+<?php
+/**
+ *
+ */
+class TripalEntityViewsController extends EntityDefaultViewsController {
+
+  /**
+   * Edit or add extra fields to views_data().
+   */
+  public function views_data() {
+    $data = parent::views_data();
+
+    // Change handlers for Date Timestamps.
+    // Date Created.
+    $data['tripal_entity']['created']['field']['handler'] = 'views_handler_field_date';
+    $data['tripal_entity']['created']['sort']['handler'] = 'views_handler_sort_date';
+    $data['tripal_entity']['created']['filter']['handler'] = 'views_handler_filter_date';
+    // Date Changed/Updated.
+    $data['tripal_entity']['changed']['field']['handler'] = 'views_handler_field_date';
+    $data['tripal_entity']['changed']['sort']['handler'] = 'views_handler_sort_date';
+    $data['tripal_entity']['changed']['filter']['handler'] = 'views_handler_filter_date';
+
+    return $data;
+  }
+
+}

tripal/includes/TripalTermViewsController.inc

@@ -0,0 +1,35 @@
+<?php
+/**
+ *
+ */
+class TripalTermViewsController extends EntityDefaultViewsController {
+
+  /**
+   * Edit or add extra fields to views_data().
+   */
+  public function views_data() {
+    $data = parent::views_data();
+
+    // Change handlers for Date Timestamps.
+    // Date Created.
+    $data['tripal_term']['created']['field']['handler'] = 'views_handler_field_date';
+    $data['tripal_term']['created']['sort']['handler'] = 'views_handler_sort_date';
+    $data['tripal_term']['created']['filter']['handler'] = 'views_handler_filter_date';
+    // Date Changed/Updated.
+    $data['tripal_term']['changed']['field']['handler'] = 'views_handler_field_date';
+    $data['tripal_term']['changed']['sort']['handler'] = 'views_handler_sort_date';
+    $data['tripal_term']['changed']['filter']['handler'] = 'views_handler_filter_date';
+
+    $data['tripal_term']['table']['join'] = array();
+
+    // Join the term to it's entity type.
+    $data['tripal_term']['table']['join']['tripal_entity'] = array(
+      'handler' => 'views_join',
+      'left_field' => 'term_id',
+      'field' => 'id',
+    );
+
+    return $data;
+  }
+
+}

tripal/includes/TripalVocabViewsController.inc

@@ -0,0 +1,34 @@
+<?php
+/**
+ *
+ */
+class TripalVocabViewsController extends EntityDefaultViewsController {
+
+  /**
+   * Edit or add extra fields to views_data().
+   */
+  public function views_data() {
+    $data = parent::views_data();
+
+    // Change handlers for Date Timestamps.
+    // Date Created.
+    $data['tripal_vocab']['created']['field']['handler'] = 'views_handler_field_date';
+    $data['tripal_vocab']['created']['sort']['handler'] = 'views_handler_sort_date';
+    $data['tripal_vocab']['created']['filter']['handler'] = 'views_handler_filter_date';
+    // Date Changed/Updated.
+    $data['tripal_vocab']['changed']['field']['handler'] = 'views_handler_field_date';
+    $data['tripal_vocab']['changed']['sort']['handler'] = 'views_handler_sort_date';
+    $data['tripal_vocab']['changed']['filter']['handler'] = 'views_handler_filter_date';
+
+    // Join the term to it's vocabulary so we know it's namespace.
+    $data['tripal_vocab']['table']['join'] = array();
+    $data['tripal_vocab']['table']['join']['tripal_term'] = array(
+      'handler' => 'views_join',
+      'left_field' => 'vocab_id',
+      'field' => 'id',
+    );
+
+    return $data;
+  }
+
+}

tripal/includes/tripal.views_default.inc

@@ -0,0 +1,246 @@
+<?php
+
+/**
+ * Implements hook_views_default_views().
+ * Define default views related primarily to tripal entities.
+ */
+function tripal_views_default_views() {
+  $views = array();
+
+// Vocabulary Search.
+$view = new view();
+$view->name = 'tripal_vocabularies';
+$view->description = '';
+$view->tag = 'default';
+$view->base_table = 'tripal_vocab';
+$view->human_name = 'Search Vocabularies';
+$view->core = 7;
+$view->api_version = '3.0';
+$view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
+
+/* Display: Master */
+$handler = $view->new_display('default', 'Master', 'default');
+$handler->display->display_options['title'] = 'Search Vocabularies';
+$handler->display->display_options['use_more_always'] = FALSE;
+$handler->display->display_options['access']['type'] = 'none';
+$handler->display->display_options['cache']['type'] = 'none';
+$handler->display->display_options['query']['type'] = 'views_query';
+$handler->display->display_options['exposed_form']['type'] = 'input_required';
+$handler->display->display_options['exposed_form']['options']['submit_button'] = 'Search';
+$handler->display->display_options['exposed_form']['options']['text_input_required'] = 'Use the namespace to search for specific vocabularies or leave it blank to see all vocabularies currently in use on your site.';
+$handler->display->display_options['exposed_form']['options']['text_input_required_format'] = 'filtered_html';
+$handler->display->display_options['pager']['type'] = 'full';
+$handler->display->display_options['pager']['options']['items_per_page'] = '50';
+$handler->display->display_options['pager']['options']['offset'] = '0';
+$handler->display->display_options['pager']['options']['id'] = '0';
+$handler->display->display_options['pager']['options']['quantity'] = '9';
+$handler->display->display_options['style_plugin'] = 'table';
+/* Field: Controlled Vocabulary: Namespace */
+$handler->display->display_options['fields']['namespace']['id'] = 'namespace';
+$handler->display->display_options['fields']['namespace']['table'] = 'tripal_vocab';
+$handler->display->display_options['fields']['namespace']['field'] = 'namespace';
+/* Field: Controlled Vocabulary: Created */
+$handler->display->display_options['fields']['created']['id'] = 'created';
+$handler->display->display_options['fields']['created']['table'] = 'tripal_vocab';
+$handler->display->display_options['fields']['created']['field'] = 'created';
+/* Field: Controlled Vocabulary: Changed */
+$handler->display->display_options['fields']['changed']['id'] = 'changed';
+$handler->display->display_options['fields']['changed']['table'] = 'tripal_vocab';
+$handler->display->display_options['fields']['changed']['field'] = 'changed';
+/* Filter criterion: Controlled Vocabulary: Namespace */
+$handler->display->display_options['filters']['namespace']['id'] = 'namespace';
+$handler->display->display_options['filters']['namespace']['table'] = 'tripal_vocab';
+$handler->display->display_options['filters']['namespace']['field'] = 'namespace';
+$handler->display->display_options['filters']['namespace']['operator'] = 'contains';
+$handler->display->display_options['filters']['namespace']['exposed'] = TRUE;
+$handler->display->display_options['filters']['namespace']['expose']['operator_id'] = 'namespace_op';
+$handler->display->display_options['filters']['namespace']['expose']['label'] = 'Namespace';
+$handler->display->display_options['filters']['namespace']['expose']['description'] = 'The vocabulary namespace (partial names accepted).';
+$handler->display->display_options['filters']['namespace']['expose']['operator'] = 'namespace_op';
+$handler->display->display_options['filters']['namespace']['expose']['identifier'] = 'namespace';
+$handler->display->display_options['filters']['namespace']['expose']['remember_roles'] = array(
+  2 => '2',
+  1 => 0,
+  3 => 0,
+);
+
+/* Display: Page */
+$handler = $view->new_display('page', 'Page', 'page');
+$handler->display->display_options['path'] = 'admin/tripal/terms/vocabulary-search';
+$handler->display->display_options['menu']['type'] = 'normal';
+$handler->display->display_options['menu']['title'] = 'Search Vocabularies';
+$handler->display->display_options['menu']['description'] = 'Search the vocabularies currently in use.';
+$handler->display->display_options['menu']['weight'] = '0';
+$handler->display->display_options['menu']['name'] = 'management';
+$handler->display->display_options['menu']['context'] = 0;
+$handler->display->display_options['menu']['context_only_inline'] = 0;
+
+$views[$view->name] = $view;
+
+// Term Search.
+$view = new view();
+$view->name = 'tripal_terms';
+$view->description = '';
+$view->tag = 'default';
+$view->base_table = 'tripal_term';
+$view->human_name = 'Search Terms';
+$view->core = 7;
+$view->api_version = '3.0';
+$view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
+
+/* Display: Master */
+$handler = $view->new_display('default', 'Master', 'default');
+$handler->display->display_options['title'] = 'Search Terms';
+$handler->display->display_options['use_more_always'] = FALSE;
+$handler->display->display_options['access']['type'] = 'none';
+$handler->display->display_options['cache']['type'] = 'none';
+$handler->display->display_options['query']['type'] = 'views_query';
+$handler->display->display_options['exposed_form']['type'] = 'input_required';
+$handler->display->display_options['exposed_form']['options']['submit_button'] = 'Search';
+$handler->display->display_options['exposed_form']['options']['text_input_required'] = 'Use the filters to search for the term you are interested in or leave them blank to see all terms defining Tripal Content Types.';
+$handler->display->display_options['exposed_form']['options']['text_input_required_format'] = 'filtered_html';
+$handler->display->display_options['pager']['type'] = 'full';
+$handler->display->display_options['pager']['options']['items_per_page'] = '50';
+$handler->display->display_options['style_plugin'] = 'table';
+$handler->display->display_options['style_options']['columns'] = array(
+  'namespace' => 'namespace',
+  'name' => 'name',
+  'accession' => 'accession',
+  'created' => 'created',
+  'changed' => 'changed',
+);
+$handler->display->display_options['style_options']['default'] = '-1';
+$handler->display->display_options['style_options']['info'] = array(
+  'namespace' => array(
+    'sortable' => 1,
+    'default_sort_order' => 'asc',
+    'align' => '',
+    'separator' => '',
+    'empty_column' => 0,
+  ),
+  'name' => array(
+    'sortable' => 1,
+    'default_sort_order' => 'asc',
+    'align' => '',
+    'separator' => '',
+    'empty_column' => 0,
+  ),
+  'accession' => array(
+    'sortable' => 1,
+    'default_sort_order' => 'asc',
+    'align' => '',
+    'separator' => '',
+    'empty_column' => 0,
+  ),
+  'created' => array(
+    'sortable' => 1,
+    'default_sort_order' => 'asc',
+    'align' => '',
+    'separator' => '',
+    'empty_column' => 0,
+  ),
+  'changed' => array(
+    'sortable' => 1,
+    'default_sort_order' => 'asc',
+    'align' => '',
+    'separator' => '',
+    'empty_column' => 0,
+  ),
+);
+/* Field: Controlled Vocabulary: Namespace */
+$handler->display->display_options['fields']['namespace']['id'] = 'namespace';
+$handler->display->display_options['fields']['namespace']['table'] = 'tripal_vocab';
+$handler->display->display_options['fields']['namespace']['field'] = 'namespace';
+/* Field: Controlled Vocabulary Term: Name */
+$handler->display->display_options['fields']['name']['id'] = 'name';
+$handler->display->display_options['fields']['name']['table'] = 'tripal_term';
+$handler->display->display_options['fields']['name']['field'] = 'name';
+/* Field: Controlled Vocabulary Term: Accession */
+$handler->display->display_options['fields']['accession']['id'] = 'accession';
+$handler->display->display_options['fields']['accession']['table'] = 'tripal_term';
+$handler->display->display_options['fields']['accession']['field'] = 'accession';
+/* Field: Controlled Vocabulary Term: Created */
+$handler->display->display_options['fields']['created']['id'] = 'created';
+$handler->display->display_options['fields']['created']['table'] = 'tripal_term';
+$handler->display->display_options['fields']['created']['field'] = 'created';
+$handler->display->display_options['fields']['created']['date_format'] = 'short';
+$handler->display->display_options['fields']['created']['second_date_format'] = 'long';
+/* Field: Controlled Vocabulary Term: Changed */
+$handler->display->display_options['fields']['changed']['id'] = 'changed';
+$handler->display->display_options['fields']['changed']['table'] = 'tripal_term';
+$handler->display->display_options['fields']['changed']['field'] = 'changed';
+$handler->display->display_options['fields']['changed']['date_format'] = 'short';
+$handler->display->display_options['fields']['changed']['second_date_format'] = 'long';
+/* Sort criterion: Controlled Vocabulary: Namespace */
+$handler->display->display_options['sorts']['namespace']['id'] = 'namespace';
+$handler->display->display_options['sorts']['namespace']['table'] = 'tripal_vocab';
+$handler->display->display_options['sorts']['namespace']['field'] = 'namespace';
+/* Sort criterion: Controlled Vocabulary Term: Name */
+$handler->display->display_options['sorts']['name']['id'] = 'name';
+$handler->display->display_options['sorts']['name']['table'] = 'tripal_term';
+$handler->display->display_options['sorts']['name']['field'] = 'name';
+/* Filter criterion: Controlled Vocabulary: Namespace */
+$handler->display->display_options['filters']['namespace']['id'] = 'namespace';
+$handler->display->display_options['filters']['namespace']['table'] = 'tripal_vocab';
+$handler->display->display_options['filters']['namespace']['field'] = 'namespace';
+$handler->display->display_options['filters']['namespace']['operator'] = 'contains';
+$handler->display->display_options['filters']['namespace']['exposed'] = TRUE;
+$handler->display->display_options['filters']['namespace']['expose']['operator_id'] = 'namespace_op';
+$handler->display->display_options['filters']['namespace']['expose']['label'] = 'Vocabulary Namespace';
+$handler->display->display_options['filters']['namespace']['expose']['description'] = 'The vocabulary namespace (partial names accepted).';
+$handler->display->display_options['filters']['namespace']['expose']['operator'] = 'namespace_op';
+$handler->display->display_options['filters']['namespace']['expose']['identifier'] = 'namespace';
+$handler->display->display_options['filters']['namespace']['expose']['remember_roles'] = array(
+  2 => '2',
+  1 => 0,
+  3 => 0,
+);
+/* Filter criterion: Controlled Vocabulary Term: Accession */
+$handler->display->display_options['filters']['accession']['id'] = 'accession';
+$handler->display->display_options['filters']['accession']['table'] = 'tripal_term';
+$handler->display->display_options['filters']['accession']['field'] = 'accession';
+$handler->display->display_options['filters']['accession']['operator'] = 'contains';
+$handler->display->display_options['filters']['accession']['exposed'] = TRUE;
+$handler->display->display_options['filters']['accession']['expose']['operator_id'] = 'accession_op';
+$handler->display->display_options['filters']['accession']['expose']['label'] = 'Accession';
+$handler->display->display_options['filters']['accession']['expose']['description'] = 'The accession of the term (partial accessions accepted).';
+$handler->display->display_options['filters']['accession']['expose']['operator'] = 'accession_op';
+$handler->display->display_options['filters']['accession']['expose']['identifier'] = 'accession';
+$handler->display->display_options['filters']['accession']['expose']['remember_roles'] = array(
+  2 => '2',
+  1 => 0,
+  3 => 0,
+);
+/* Filter criterion: Controlled Vocabulary Term: Name */
+$handler->display->display_options['filters']['name']['id'] = 'name';
+$handler->display->display_options['filters']['name']['table'] = 'tripal_term';
+$handler->display->display_options['filters']['name']['field'] = 'name';
+$handler->display->display_options['filters']['name']['operator'] = 'contains';
+$handler->display->display_options['filters']['name']['exposed'] = TRUE;
+$handler->display->display_options['filters']['name']['expose']['operator_id'] = 'name_op';
+$handler->display->display_options['filters']['name']['expose']['label'] = 'Name';
+$handler->display->display_options['filters']['name']['expose']['description'] = 'The name of the term (partial names accepted).';
+$handler->display->display_options['filters']['name']['expose']['operator'] = 'name_op';
+$handler->display->display_options['filters']['name']['expose']['identifier'] = 'name';
+$handler->display->display_options['filters']['name']['expose']['remember_roles'] = array(
+  2 => '2',
+  1 => 0,
+  3 => 0,
+);
+
+/* Display: Page */
+$handler = $view->new_display('page', 'Page', 'page');
+$handler->display->display_options['path'] = 'admin/tripal/terms/term-search';
+$handler->display->display_options['menu']['type'] = 'normal';
+$handler->display->display_options['menu']['title'] = 'Search Terms';
+$handler->display->display_options['menu']['description'] = 'Search the terms currently defining Tripal Content Types.';
+$handler->display->display_options['menu']['weight'] = '0';
+$handler->display->display_options['menu']['name'] = 'management';
+$handler->display->display_options['menu']['context'] = 0;
+$handler->display->display_options['menu']['context_only_inline'] = 0;
+
+$views[$view->name] = $view;
+
+  return $views;
+}
+

tripal/tripal.module

@@ -13,11 +13,14 @@ require_once "api/tripal.variables.api.inc";
 
 require_once "includes/TripalVocab.inc";
 require_once "includes/TripalVocabController.inc";
+require_once "includes/TripalVocabViewsController.inc";
 require_once "includes/TripalTerm.inc";
 require_once "includes/TripalTermController.inc";
+require_once "includes/TripalTermViewsController.inc";
 require_once "includes/TripalEntity.inc";
 require_once "includes/TripalEntityController.inc";
 require_once "includes/TripalEntityUIController.inc";
+require_once "includes/TripalEntityViewsController.inc";
 require_once "includes/TripalBundle.inc";
 require_once "includes/TripalBundleController.inc";
 require_once "includes/TripalBundleUIController.inc";
@@ -44,6 +47,7 @@ require_once "includes/TripalBundleUIController.inc";
 function tripal_views_api() {
   return array(
     'api' => 3.0,
+    'path' => drupal_get_path('module', 'tripal') . '/includes',
   );
 }
 
@@ -450,6 +454,9 @@ function tripal_entity_info() {
     'entity class' => 'TripalVocab',
     'controller class' => 'TripalVocabController',
 
+    // Adds Views integration for this entity.
+    'views controller class' => 'TripalVocabViewsController',
+
     // The table for this entity defined in hook_schema()
     'base table' => 'tripal_vocab',
 
@@ -499,6 +506,9 @@ function tripal_entity_info() {
     'entity class' => 'TripalTerm',
     'controller class' => 'TripalTermController',
 
+    // Adds Views integration for this entity.
+    'views controller class' => 'TripalTermViewsController',
+
     // The table for this entity defined in hook_schema()
     'base table' => 'tripal_term',
 
@@ -547,6 +557,9 @@ function tripal_entity_info() {
     'entity class' => 'TripalEntity',
     'controller class' => 'TripalEntityController',
 
+    // Adds Views integration for this entity.
+    'views controller class' => 'TripalEntityViewsController',
+
     // The table for this entity defined in hook_schema()
     'base table' => 'tripal_entity',
 
@@ -715,4 +728,4 @@ function TripalBundle_load($bundle_type, $reset = FALSE) {
 function TripalEntity_load($id, $reset = FALSE) {
   $entity = entity_load('TripalEntity', array($id), array(), $reset);
   return reset($entity);
-}
+}