Correcting theming issues

theme_tripal/css/tripal_feature.css

@@ -1,7 +1,8 @@
-#tripal_feature-featureloc_sequence {
+#tripal_feature-featureloc_sequence,
+#tripal_feature-sequence-residues {
   height: 500px;
   overflow: scroll;
-   background-color: #FFFFFF;
+  background-color: #FFFFFF;
 }
 
 div#tripal_feature-featureloc_sequence-legend {
@@ -28,6 +29,14 @@ span.tripal_feature-featureloc_sequence-CDS {
 span.tripal_feature-featureloc_sequence-mRNA {
    background-color: #FFFF99;
 }
+
+span.tripal_feature-featureloc_sequence-exon {
+   background-color: #9999FF;
+}
+
+span.tripal_feature-featureloc_sequence-intron {
+   background-color: #FF99FF;
+}
 /* information tables on the feature pages */
 table.tripal_feature-relationships-subject-table th {
    background-color: #EEEEEE;

theme_tripal/tripal_analysis_blast/tripal_analysis_blast_results.tpl.php

@@ -0,0 +1,8 @@
+<?php
+$results = $variables['tripal_analysis_blast']['results'];
+?>
+<div id="tripal_analysis_blast-results-box" class="tripal_analysis_blast-box tripal-info-box">
+  <div class="tripal_analysis_blast-info-box-title tripal-info-box-title">Blast Results</div>
+  <div class="tripal_analysis_blast-info-box-desc tripal-info-box-desc"></div>
+  <?php print $results ?>
+</div>

theme_tripal/tripal_feature/tripal_feature_properties.tpl.php

@@ -4,7 +4,7 @@ $feature = $variables['node']->feature;
 ?>
 <div id="tripal_feature-properties-box" class="tripal_feature-info-box tripal-info-box">
   <div class="tripal_feature-info-box-title tripal-info-box-title">Properties</div>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The feature '<?php print $feature->featurename ?>' is also known by these names</div>
+  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The feature '<?php print $feature->featurename ?>' has these properties</div>
   <?php if(count($properties) > 0){ ?>
   <table class="tripal_feature-table tripal-table tripal-table-horz">
     <tr>

theme_tripal/tripal_feature/tripal_feature_sequence.tpl.php

@@ -8,7 +8,7 @@ $feature = $variables['node']->feature;
   <pre id="tripal_feature-sequence-residues"><?php 
      if($feature->residues){
         // format the sequence to break ever 100 residues
-        print ereg_replace("(.{100})","\\1<br>",$feature->residues); 
+        print ereg_replace("(.{60})","\\1<br>",$feature->residues); 
      } else {
         print "sequence currently not available";
      } ?>

theme_tripal/tripal_feature/tripal_feature_synonyms.tpl.php

@@ -4,7 +4,7 @@ $feature = $variables['node']->feature;
 ?>
 <div id="tripal_feature-synonyms-box" class="tripal_feature-info-box tripal-info-box">
   <div class="tripal_feature-info-box-title tripal-info-box-title">Synonyms</div>
-  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The feature '<?php print $feature->featurename ?>' has the following properites</div>
+  <div class="tripal_feature-info-box-desc tripal-info-box-desc">The feature '<?php print $feature->featurename ?>' has the following synonyms</div>
   <?php if(count($synonyms) > 0){ ?>
   <table class="tripal_feature-table tripal-table tripal-table-horz">
     <tr>