Merge pull request #710 from tripal/709_legacy_tripal_stock_mview

Add undefined function back to  tripal_stock.install

legacy/tripal_stock/tripal_stock.install

@@ -101,3 +101,74 @@ function tripal_stock_schema() {
 
   return $schema;
 }
+
+/**
+ * Creates a materialized view that stores the type & number of stocks per organism
+ *
+ * @ingroup tripal_stock
+ */
+function tripal_stock_add_organism_count_mview() {
+  $view_name = 'organism_stock_count';
+  $comment = 'Stores the type and number of stocks per organism';
+
+  $schema = array(
+    'description' => $comment,
+    'table' => $view_name,
+    'fields' => array(
+      'organism_id' => array(
+        'size' => 'big',
+        'type' => 'int',
+        'not null' => TRUE,
+      ),
+      'genus' => array(
+        'type' => 'varchar',
+        'length' => '255',
+        'not null' => TRUE,
+      ),
+      'species' => array(
+        'type' => 'varchar',
+        'length' => '255',
+        'not null' => TRUE,
+      ),
+      'common_name' => array(
+        'type' => 'varchar',
+        'length' => '255',
+        'not null' => FALSE,
+      ),
+      'num_stocks' => array(
+        'type' => 'int',
+        'not null' => TRUE,
+      ),
+      'cvterm_id' => array(
+        'size' => 'big',
+        'type' => 'int',
+        'not null' => TRUE,
+      ),
+      'stock_type' => array(
+        'type' => 'varchar',
+        'length' => '255',
+        'not null' => TRUE,
+      ),
+    ),
+    'indexes' => array(
+      'organism_stock_count_idx1' => array('organism_id'),
+      'organism_stock_count_idx2' => array('cvterm_id'),
+      'organism_stock_count_idx3' => array('stock_type'),
+    ),
+  );
+
+  $sql = "
+    SELECT
+        O.organism_id, O.genus, O.species, O.common_name,
+        count(S.stock_id) as num_stocks,
+        CVT.cvterm_id, CVT.name as stock_type
+     FROM organism O
+        INNER JOIN stock S  ON O.Organism_id = S.organism_id
+        INNER JOIN cvterm CVT ON S.type_id     = CVT.cvterm_id
+     GROUP BY
+        O.Organism_id, O.genus, O.species, O.common_name, CVT.cvterm_id, CVT.name
+  ";
+
+  tripal_add_mview($view_name, 'tripal_stock', $schema, $sql, $comment);
+}
+