Blast best hit report updated

theme_tripal/tripal_analysis_blast/tripal_analysis_blast_base.tpl.php

@@ -57,6 +57,15 @@ $blast = $node->analysis->tripal_analysis_blast;
       </tr>  
       <tr class="tripal_analysis_blast-table-odd-row tripal-table-odd-row">
         <th>Report</th>
+        <td>
+        	<?php 
+        		if ($analysis->blast_report) {					
+        			print "<a href=$analysis->blast_report>View the best hit report</a>";
+        		} else {
+        			print "not available";
+        		}
+        	?>
+        	</td>
       </tr>       	                                
    </table>   
 </div>

theme_tripal/tripal_analysis_blast/tripal_analysis_blast_report.tpl.php

@@ -0,0 +1,123 @@
+<?php
+$report  = $variables['report_object'];
+$hits = $report->hits;
+?>
+
+<style type="text/css">
+#tripal_blast_report_current_page {
+	float: right;
+	margin-bottom: 5px;
+	margin-right: 20px;
+}
+#tripal_blast_report_pager {
+	float: right;
+	margin-bottom: 10px;
+	margin-right: 20px;
+}
+#tripal_blast_report_per_page {
+	float: left;
+	margin-bottom: 10px;
+}
+</style>
+
+<div id="tripal_ajaxLoading" style="display:none">
+	<div id="loadingText">Loading...</div>
+	<img src="<?php print url("sites/all/themes/theme_tripal/images/ajax-loader.gif") ?>">
+</div>
+
+<div id="blast-hits-report">
+	<strong>Analysis Date: </strong><?php print $report->time?> (<a href=<?php print $report->url ?>><?php print $report->name ?></a>)<br>
+	There are <strong><?php print $report->counter ?></strong> records. 
+	<div id=tripal_blast_report_current_page>page <strong><?php print $report->currentpage ?></strong> of <strong><?php print $report->no_page ?></strong>
+	</div>
+	
+	<table id="tripal_analysi_blast-report-table" class="tripal_analysis_blast-table tripal-table tripal-table-horz">
+		<tr class="tripal_analysis_blast-table-odd-row tripal-table-odd-row">
+			<th nowrap><?php if ($report->sort == 0) {print $report->symbol;} ?>
+				<a href=<?php print $report->byQuery ?>>Query</a>
+			</th>
+			<th nowrap><?php if ($report->sort == 1) {print $report->symbol;} ?>
+				<a href=<?php print $report->byMatchName ?>>Match Name</a>
+			</th>
+			<th nowrap><?php if ($report->sort == 2) {print $report->symbol;} ?>
+				<a href=<?php print $report->byDescription ?>>Description</a>
+			</th>
+			<th nowrap><?php if ($report->sort == 3) {print $report->symbol;} ?>
+				<a href=<?php print $report->byEvalue ?>>E-value</a>
+			</th>
+			<th nowrap><?php if ($report->sort == 4) {print $report->symbol;} ?>
+				<a href=<?php print $report->byIdentity ?>>%Identity</a>
+			</th>
+			<th nowrap><?php if ($report->sort == 5) {print $report->symbol;} ?>
+				<a href=<?php print $report->byLength ?>>Length</a>
+			</th>
+		</tr>
+		
+		<?php foreach($hits AS $hit) {?>
+		<tr class="<?php print $hit->class ?>">
+		                           <td nowrap><a href=<?php print $hit->q_url ?>><?php print $hit->query ?></a></td>
+		                           <td nowrap><a href=<?php print $hit->urlprefix.$hit->match ?> target=_blank><?php print $hit->match ?></td>
+		                           <td><?php print $hit->desc ?></td>
+		                           <td nowrap><?php print $hit->evalue ?></td>
+		                           <td nowrap><?php print $hit->identity ?></td>
+		                           <td nowrap><?php print $hit->length ?></td>
+		                         </tr>
+		<?php } ?>	
+			
+	</table>
+			<div id="tripal_blast_report_per_page">Show	
+				<?php 
+				$per_page = $report->per_page;
+				$path = $report->path;
+				if ($per_page == 10) {?>
+					<strong>10</strong> | 
+				<?php } else { 
+					$url_path = url($path."10");
+				?>	
+					<a href=<?php print $url_path ?>>10</a> | 
+				<?php } 
+				if ($per_page == 20) {
+				?>
+					<strong>20</strong> | 
+				<?php } else {
+					$url_path = url($path."20");
+				?>
+					<a href=<?php print $url_path ?>>20</a> | 
+				<?php } 
+				if ($per_page == 50) {
+				?>
+					<strong>50</strong> | 
+				<?php } else {
+					$url_path = url($path."50");
+				?>
+					<a href=<?php print $url_path ?>>50</a> | 
+				<?php }
+				if ($per_page == 100) {
+				?>
+					<strong>100</strong> | 
+				<?php } else {
+					$url_path = url($path."100");
+				?>
+					<a href=<?php print $url_path ?>>100</a> | 
+				<?php }
+				if ($per_page == 200) {
+				?>
+					<strong>200</strong> | 
+				<?php } else {
+					$url_path = url($path."200");
+				?>
+			   	<a href=<?php print $url_path ?>>200</a>
+				<?php } ?>
+				
+				records per page
+		</div>
+		<div id=tripal_blast_report_pager>page
+			<select id=tripal_blast_report_page_selector onChange="tripal_update_best_hit_report(this, <?php print $report->analysis_id ?>,<?php print $report->sort ?>, <?php print $report->descending ?>, <?php print $report->per_page ?>)">
+			<?php  for ($i = 1; $i <= $report->no_page; $i ++) { ?>
+				<option value=<?php print $i ?>><?php print $i ?></option>
+			<?php } ?>	                           
+			</select>
+		</div>
+</div>
+			
+