Adding back in the missing interpro feature template page

tripal_analysis_interpro/theme/tripal_feature/tripal_feature_interpro_results.tpl.php

@@ -0,0 +1,121 @@
+<?php
+$feature  = $variables['node']->feature;
+$results = $feature->tripal_analysis_interpro->results->xml;
+$resultsHTML = $feature->tripal_analysis_interpro->results->html;
+
+if(count($results) > 0){ 
+   $i = 0;
+   foreach($results as $analysis_id => $analysisprops){ 
+     $analysis = $analysisprops['analysis'];
+     $protein_ORFs = $analysisprops['protein_ORFs']; 
+     $terms = $analysisprops['allterms']; 
+     ?>
+     <div id="tripal_feature-interpro_results_<?php print $i?>-box" class="tripal_analysis_interpro-box tripal-info-box">
+        <div class="tripal_feature-info-box-title tripal-info-box-title">InterPro Report <?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?></div>
+        <div class="tripal_feature-info-box-desc tripal-info-box-desc"><?php 
+            if($analysis->nid){ ?>
+               Analysis name: <a href="<?php print url('node/'.$analysis->nid) ?>"><?php print $analysis->name?></a><?php
+            } else { ?>
+               Analysis name: <?php print $analysis->name;
+            } ?><br>
+            Date Performed: <?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?>
+        </div>
+
+     <div class="tripal_feature-interpro_results_subtitle">Summary of Annotated IPR terms</div>
+     <table id="tripal_feature-interpro_summary-<?php $i ?>-table" class="tripal_analysis_interpro-summary-table tripal-table tripal-table-horz">
+      <tr>
+        <th>Term</td>
+        <th>Name</td>
+      </tr>
+     <?php 
+     $j=0;
+     foreach($terms as $term){ 
+       $ipr_id = $term[0];
+       $ipr_name = $term[1];
+       $class = 'tripal_feature-table-odd-row tripal-table-odd-row';
+       if($j % 2 == 0 ){
+         $class = 'tripal_feature-table-even-row tripal-table-even-row';
+       }?>
+       <tr class="<?php print $class ?>">
+         <td><?php print $ipr_id ?></td>
+         <td><?php print $ipr_name ?></td>         
+       </tr>
+       <?php
+       $j++;
+     } ?>
+     </table>
+     <br><br>
+     <div class="tripal_feature-interpro_results_subtitle">Analysis Details</div>
+     <table id="tripal_feature-interpro_results-<?php $i ?>-table" class="tripal-table tripal_feature_interpro-results-table tripal-table-horz" style="border-top: 0px; border-bottom: 0px">
+     <?php
+     foreach($protein_ORFs as $orf){  
+        $terms = $orf['terms'];
+        $orf = $orf['orf'];  
+        ?>
+        <?php foreach($terms as $term){ 
+          $matches = $term['matches'];
+          $ipr_id = $term['ipr_id'];
+          $ipr_name = $term['ipr_name'];
+          $ipr_type = $term['ipr_type']; ?>          
+            <tr>
+              <td colspan="4" style="padding-left: 0px">ORF: <?php print $orf['orf_id'] ?>, Length: <?php print $orf['orf_length'] ?> <br>
+                              IPR Term: <?php print "$ipr_id $ipr_name ($ipr_type)"; ?></th>
+            </tr>
+            <tr style="border-top: solid 1px;">
+              <th>Method</th>
+              <th>Identifier</th>
+              <th>Description</th>
+              <th>Matches<sup>*</sup></th>
+            </tr>
+            <?php $j = 0; 
+            foreach ($matches as $match){
+               $match_id = $match['match_id'];
+               $match_name = $match['match_name'];
+               $match_dbname = $match['match_dbname'];
+
+
+               $class = 'tripal_feature-table-odd-row tripal-table-odd-row';
+               if($j % 2 == 0 ){
+                  $class = 'tripal_feature-table-even-row tripal-table-even-row';
+               }?>
+               <tr class="<?php print $class ?>">
+                 <td><?php print $match_dbname ?></td>
+                 <td><?php print $match_id ?></td>
+                 <td><?php print $match_name ?></td>
+                 <td nowrap><?php
+                    $locations = $match['locations'];
+                    foreach($locations as $location){
+                      print $location['match_score']." [".$location['match_start']."-".$location['match_end']."] " . $location['match_status'] ."<br>";
+                      #$match_evidence =  $location['match_evidence'];
+                    } ?>
+                 </td>
+               </tr>
+               <?php
+               $j++;  
+            } // end foreach matches ?>
+            <tr><td colspan="4"><sup>* score [start-end] status</sup></td></tr> <?php
+        } // end foreach terms
+        $i++;
+     } // end foreach orfs ?>
+     </table>
+     </div> <?php
+   } // end for each analysis 
+} // end if
+if($resultsHTML){  ?>
+   <div id="tripal_feature-interpro_results_<?php print $i?>-box" class="tripal_analysis_interpro-box tripal-info-box">
+     <div class="tripal_feature-info-box-title tripal-info-box-title">InterPro Report <?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?></div>
+     <div class="tripal_feature-info-box-desc tripal-info-box-desc"><?php 
+         if($analysis->nid){ ?>
+            Analysis name: <a href="<?php print url('node/'.$analysis->nid) ?>"><?php print $analysis->name?></a><?php
+         } else { ?>
+            Analysis name: <?php print $analysis->name;
+         } ?><br>
+         Date Performed: <?php print preg_replace("/^(\d+-\d+-\d+) .*/","$1",$analysis->timeexecuted); ?>
+     </div>
+
+   <div class="tripal_feature-interpro_results_subtitle">Summary of Annotated IPR terms</div> <?php 
+   print $resultsHTML;?>
+   </div> <?php
+}
+?>
+