Forgot to add the new tripal_chado.bundle.inc file

tripal_chado/includes/tripal_chado.bundle.inc

@@ -0,0 +1,75 @@
+<?php
+/**
+ * Implements hook_chado_bundle_create().
+ *
+ * This is a Tripal hook. It allows any module to perform tasks after
+ * a bundle has been created.
+ *
+ * @param $bundle
+ *  The TripalBundle object.
+ */
+
+function tripal_chado_bundle_create($bundle, $storage_args) {
+  $entity_type = $bundle->type;
+
+  if (!array_key_exists('data_table', $storage_args)) {
+    throw new Exception('Cannot create content type. Missing the "data_table" for this bundle.');
+  }
+
+  $type_id = '';
+  if (array_key_exists('type_id', $storage_args)) {
+    $type_id = $storage_args['type_id'];
+  }
+  else {
+    $term = tripal_load_term_entity(array('term_id' => $bundle->term_id));
+    $vocab = tripal_load_vocab_entity(array('vocab_id' => $term->vocab_id));
+    $cvterm = chado_generate_var('cvterm', array(
+      'dbxref_id' => array(
+        'db_id' => array(
+          'name' => $vocab->vocabulary,
+        ),
+        'accession' => $term->accession
+      ),
+    ));
+    $type_id = $cvterm->cvterm_id;
+  }
+
+  // Before adding fields to this bundle, let's make sure we associate
+  // what table in Chado this bundle is mapped to
+  $chado_bundle = db_select('chado_bundle', 'cb')
+    ->fields('cb', array('chado_bundle_id'))
+    ->condition('bundle_id', $bundle->id)
+    ->execute()
+    ->fetchField();
+  if (!$chado_bundle) {
+    $record = array(
+      'bundle_id' => $bundle->id,
+      'data_table' => $storage_args['data_table'],
+      'type_id' => $type_id,
+    );
+    if (array_key_exists('type_linker_table', $storage_args)) {
+      $record['type_linker_table'] = $storage_args['type_linker_table'];
+    }
+    if (array_key_exists('type_column', $storage_args)) {
+      $record['type_column'] = $storage_args['type_column'];
+    }
+    $success = drupal_write_record('chado_bundle', $record);
+    if (!$success) {
+      throw new Exception('Cannot create content type. Problem associating type with Chado.');
+    }
+  }
+
+
+  // Before adding fields to the bundle we need to story the Chado table that
+  // this bundle maps to.  That information is in the $args['form_values']
+  // array.  The $args['form_values'] array contains values that indicate the
+  // Chado table.
+  // TODO: we need to store the chado table and type field used for this
+  // bundle.
+
+  // Create/Add the new fields for this bundle.
+  tripal_chado_bundle_create_fields($entity_type, $bundle, $record);
+
+  // Create/Add the new field instances for this bundle.
+  tripal_chado_bundle_create_instances($entity_type, $bundle, $record);
+}