Added two new views handlers

tripal/includes/TripalEntityViewsController.inc

@@ -22,15 +22,18 @@ class TripalEntityViewsController extends EntityDefaultViewsController {
     $data['tripal_entity']['changed']['filter']['handler'] = 'views_handler_filter_date';
     $data['tripal_entity']['changed']['help'] = t('The date that the content was last updated.');
 
-    $data['tripal_entity']['id']['title'] = 'Tripal Content ID';
-    $data['tripal_entity']['id']['help'] = 'The title for the content';
-
     $data['tripal_entity']['id']['title'] = 'Tripal Content ID';
     $data['tripal_entity']['id']['help'] = 'The unique numeric ID for the content';
 
+
     $data['tripal_entity']['title']['help'] = 'The content\'s title.';
+    $data['tripal_entity']['title']['field']['handler'] = 'tripal_views_handler_field_entity';
+
     $data['tripal_entity']['uid']['help'] = 'The User\'s unique ID.';
+
     $data['tripal_entity']['status']['help'] = 'The publish status.';
+    $data['tripal_entity']['status']['field']['handler'] = 'tripal_views_handler_field_entity_status';
+
 
     $data['tripal_entity']['uid']['relationship'] = array(
       'base' => 'users',
@@ -46,6 +49,7 @@ class TripalEntityViewsController extends EntityDefaultViewsController {
     unset($data['tripal_entity']['bundle']);
     unset($data['tripal_entity']['term_id']);
     unset($data['tripal_entity']['type']);
+
     return $data;
   }
 

tripal/tripal.info

@@ -10,6 +10,8 @@ stylesheets[all][] = theme/css/tripal.css
 scripts[]          = theme/js/tripal.js
 
 files[] = views_handlers/tripal_views_handler_filter_select_string.inc
+files[] = views_handlers/tripal_views_handler_field_entity.inc
+files[] = views_handlers/tripal_views_handler_field_entity_status.inc
 
 dependencies[] = views
 dependencies[] = path

tripal/tripal.views.inc

@@ -319,6 +319,12 @@ function tripal_views_views_handlers() {
       'tripal_views_handler_filter_select_string' => array(
         'parent' => 'views_handler_filter_string',
       ),
+      'tripal_views_handler_field_entity' => array(
+        'parent' => 'tripal_views_handler_field_entity',
+      ),
+      'tripal_views_handler_field_entity_status' => array(
+        'parent' => 'tripal_views_handler_field_entity_status',
+      ),
 //       'tripal_views_handler_filter_textarea' => array(
 //         'parent' => 'views_handler_filter',
 //       ),

tripal/views_handlers/tripal_views_handler_field_entity.inc

@@ -0,0 +1,80 @@
+<?php
+
+/**
+ * @file
+ * Contains the basic 'entity' field handler.
+ */
+
+/**
+ * Field handler to provide simple renderer that allows linking to a entity.
+ * Definition terms:
+ * - link_to_entity default: Should this field have the checkbox "link to entity" enabled by default.
+ *
+ * @ingroup views_field_handlers
+ */
+class tripal_views_handler_field_entity extends views_handler_field {
+
+  function init(&$view, &$options) {
+    parent::init($view, $options);
+    // Don't add the additional fields to groupby
+    if (!empty($this->options['link_to_entity'])) {
+      $this->additional_fields['id'] = array('table' => 'tripal_entity', 'field' => 'id');
+      if (module_exists('translation')) {
+        $this->additional_fields['language'] = array('table' => 'entity', 'field' => 'language');
+      }
+    }
+  }
+
+  function option_definition() {
+    $options = parent::option_definition();
+    $options['link_to_entity'] = array('default' => isset($this->definition['link_to_entity default']) ? $this->definition['link_to_entity default'] : FALSE, 'bool' => TRUE);
+    return $options;
+  }
+
+  /**
+   * Provide link to entity option
+   */
+  function options_form(&$form, &$form_state) {
+    $form['link_to_entity'] = array(
+      '#title' => t('Link this field to the original piece of content'),
+      '#description' => t("Enable to override this field's links."),
+      '#type' => 'checkbox',
+      '#default_value' => !empty($this->options['link_to_entity']),
+    );
+
+    parent::options_form($form, $form_state);
+  }
+
+  /**
+   * Render whatever the data is as a link to the entity.
+   *
+   * Data should be made XSS safe prior to calling this function.
+   */
+  function render_link($data, $values) {
+    if (!empty($this->options['link_to_entity']) && !empty($this->additional_fields['id'])) {
+      if ($data !== NULL && $data !== '') {
+        $this->options['alter']['make_link'] = TRUE;
+        $this->options['alter']['path'] = "bio_data/" . $this->get_value($values, 'id');
+        if (isset($this->aliases['language'])) {
+          $languages = language_list();
+          $language = $this->get_value($values, 'language');
+          if (isset($languages[$language])) {
+            $this->options['alter']['language'] = $languages[$language];
+          }
+          else {
+            unset($this->options['alter']['language']);
+          }
+        }
+      }
+      else {
+        $this->options['alter']['make_link'] = FALSE;
+      }
+    }
+    return $data;
+  }
+
+  function render($values) {
+    $value = $this->get_value($values);
+    return $this->render_link($this->sanitize_value($value), $values);
+  }
+}

tripal/views_handlers/tripal_views_handler_field_entity_status.inc

@@ -0,0 +1,24 @@
+<?php
+/**
+ * @file
+* Contains tripal_views_handler_field_entity_status Filter Handler
+*/
+
+/**
+ * This Handler provides a generic select list for any chado field that is a string
+*  The select list includes all distinct values for that field.
+*
+* @ingroup tripal_views
+*/
+class tripal_views_handler_field_entity_status extends  views_handler_field {
+
+  function render($values) {
+    $value = $this->get_value($values);
+    if ($value == 1) {
+      return 'published';
+    }
+    else {
+      return 'unpublished';
+    }
+  }
+}