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@@ -72,7 +72,282 @@ function tripal_db_views_data() {
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function tripal_db_views_default_views() {
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$views = array();
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- // Main default view
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+ // Main DB default view
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+ $view = new view;
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+ $view->name = 'db_listing';
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+ $view->description = 'A listing of all databases.';
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+ $view->tag = 'chado default';
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+ $view->base_table = 'db';
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+ $view->core = 6;
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+ $view->api_version = '2';
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+ $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
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+ $handler = $view->new_display('default', 'Defaults', 'default');
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+ $handler->override_option('fields', array(
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+ 'name' => array(
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+ 'label' => 'Name',
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+ 'alter' => array(
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+ 'alter_text' => 0,
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+ 'text' => '',
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+ 'make_link' => 0,
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+ 'path' => '',
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+ 'absolute' => 0,
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+ 'link_class' => '',
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+ 'alt' => '',
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+ 'rel' => '',
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+ 'prefix' => '',
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+ 'suffix' => '',
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+ 'target' => '',
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+ 'help' => '',
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+ 'trim' => 0,
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+ 'max_length' => '',
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+ 'word_boundary' => 1,
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+ 'ellipsis' => 1,
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+ 'html' => 0,
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+ 'strip_tags' => 0,
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+ ),
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+ 'empty' => '',
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+ 'hide_empty' => 0,
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+ 'empty_zero' => 0,
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+ 'hide_alter_empty' => 1,
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+ 'type' => 'separator',
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+ 'separator' => ', ',
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+ 'exclude' => 0,
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+ 'id' => 'name',
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+ 'table' => 'db',
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+ 'field' => 'name',
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+ 'relationship' => 'none',
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+ ),
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+ 'description' => array(
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+ 'label' => 'Description',
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+ 'alter' => array(
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+ 'alter_text' => 0,
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+ 'text' => '',
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+ 'make_link' => 0,
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+ 'path' => '',
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+ 'absolute' => 0,
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+ 'link_class' => '',
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+ 'alt' => '',
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+ 'rel' => '',
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+ 'prefix' => '',
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+ 'suffix' => '',
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+ 'target' => '',
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+ 'help' => '',
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+ 'trim' => 0,
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+ 'max_length' => '',
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+ 'word_boundary' => 1,
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+ 'ellipsis' => 1,
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+ 'html' => 0,
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+ 'strip_tags' => 0,
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+ ),
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+ 'empty' => '',
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+ 'hide_empty' => 0,
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+ 'empty_zero' => 0,
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+ 'hide_alter_empty' => 1,
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+ 'type' => 'separator',
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+ 'separator' => ', ',
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+ 'exclude' => 0,
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+ 'id' => 'description',
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+ 'table' => 'db',
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+ 'field' => 'description',
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+ 'relationship' => 'none',
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+ ),
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+ 'url' => array(
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+ 'label' => 'Url',
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+ 'alter' => array(
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+ 'alter_text' => 0,
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+ 'text' => '',
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+ 'make_link' => 1,
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+ 'path' => '[url]',
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+ 'absolute' => 1,
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+ 'link_class' => '',
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+ 'alt' => '',
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+ 'rel' => '',
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+ 'prefix' => '',
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+ 'suffix' => '',
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+ 'target' => '_blank',
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+ 'help' => '',
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+ 'trim' => 0,
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+ 'max_length' => '',
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+ 'word_boundary' => 1,
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+ 'ellipsis' => 1,
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+ 'html' => 0,
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+ 'strip_tags' => 0,
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+ ),
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+ 'empty' => '',
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+ 'hide_empty' => 0,
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+ 'empty_zero' => 0,
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+ 'hide_alter_empty' => 1,
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+ 'type' => 'separator',
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+ 'separator' => ', ',
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+ 'exclude' => 0,
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+ 'id' => 'url',
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+ 'table' => 'db',
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+ 'field' => 'url',
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+ 'relationship' => 'none',
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+ ),
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+ 'urlprefix' => array(
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+ 'label' => 'Urlprefix',
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+ 'alter' => array(
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+ 'alter_text' => 0,
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+ 'text' => '',
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+ 'make_link' => 0,
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+ 'path' => '',
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+ 'absolute' => 0,
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+ 'link_class' => '',
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+ 'alt' => '',
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+ 'rel' => '',
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+ 'prefix' => '',
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+ 'suffix' => '',
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+ 'target' => '',
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+ 'help' => '',
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+ 'trim' => 0,
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+ 'max_length' => '',
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+ 'word_boundary' => 1,
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+ 'ellipsis' => 1,
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+ 'html' => 0,
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+ 'strip_tags' => 0,
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+ ),
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+ 'empty' => '',
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+ 'hide_empty' => 0,
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+ 'empty_zero' => 0,
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+ 'hide_alter_empty' => 1,
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+ 'type' => 'separator',
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+ 'separator' => ', ',
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+ 'exclude' => 0,
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+ 'id' => 'urlprefix',
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+ 'table' => 'db',
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+ 'field' => 'urlprefix',
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+ 'relationship' => 'none',
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+ ),
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+ ));
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+ $handler->override_option('filters', array(
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+ 'name' => array(
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+ 'operator' => 'contains',
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+ 'value' => '',
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+ 'group' => '0',
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+ 'exposed' => TRUE,
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+ 'expose' => array(
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+ 'use_operator' => 0,
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+ 'operator' => 'name_op',
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+ 'identifier' => 'name',
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+ 'label' => 'Name Contains',
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+ 'remember' => 0,
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+ ),
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+ 'case' => 0,
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+ 'id' => 'name',
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+ 'table' => 'db',
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+ 'field' => 'name',
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+ 'relationship' => 'none',
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+ 'values_form_type' => 'textfield',
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+ 'multiple' => 0,
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+ 'optional' => 0,
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+ ),
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+ 'description' => array(
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+ 'operator' => 'contains',
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+ 'value' => '',
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+ 'group' => '0',
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+ 'exposed' => TRUE,
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+ 'expose' => array(
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+ 'use_operator' => 0,
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+ 'operator' => 'description_op',
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+ 'identifier' => 'description',
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+ 'label' => 'Description Contains',
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+ 'remember' => 0,
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+ ),
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+ 'case' => 0,
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+ 'id' => 'description',
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+ 'table' => 'db',
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+ 'field' => 'description',
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+ 'relationship' => 'none',
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+ 'agg' => array(
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+ 'records_with' => 1,
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+ 'aggregates_with' => 0,
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+ ),
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+ ),
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+ 'search_results' => array(
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+ 'operator' => '=',
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+ 'value' => '',
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+ 'group' => '0',
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+ 'exposed' => FALSE,
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+ 'expose' => array(
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+ 'operator' => FALSE,
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+ 'label' => '',
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+ ),
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+ 'id' => 'search_results',
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+ 'table' => 'views',
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+ 'field' => 'search_results',
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+ 'relationship' => 'none',
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+ 'apply_button' => 'Show',
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+ 'no_results_text' => 'Click "Show" to see a list of all databases matching the entered criteria. If you leave a any of the criteria blank then the databases will be not be filtered based on that field. Furthermore, if you leave all criteria blank then all databases will be listed.',
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+ ),
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+ ));
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+ $handler->override_option('access', array(
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+ 'type' => 'perm',
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+ 'perm' => 'access chado_db content',
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+ ));
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+ $handler->override_option('cache', array(
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+ 'type' => 'none',
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+ ));
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+ $handler->override_option('title', 'Databases');
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+ $handler->override_option('header', 'Click "Show" to see a list of all databases matching the entered criteria. If you leave a any of the criteria blank then the databases will be not be filtered based on that field. Furthermore, if you leave all criteria blank then all databases will be listed.');
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+ $handler->override_option('header_format', '2');
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+ $handler->override_option('header_empty', 0);
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+ $handler->override_option('empty', 'No databases match the supplied criteria.');
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+ $handler->override_option('empty_format', '2');
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+ $handler->override_option('items_per_page', 50);
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+ $handler->override_option('use_pager', '1');
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+ $handler->override_option('style_plugin', 'table');
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+ $handler->override_option('style_options', array(
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+ 'grouping' => '',
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+ 'override' => 1,
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+ 'sticky' => 0,
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+ 'order' => 'asc',
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+ 'summary' => '',
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+ 'columns' => array(
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+ 'name' => 'name',
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+ 'url' => 'url',
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+ 'urlprefix' => 'urlprefix',
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+ 'description' => 'description',
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+ ),
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+ 'info' => array(
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+ 'name' => array(
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+ 'sortable' => 1,
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+ 'separator' => '',
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+ ),
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+ 'url' => array(
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+ 'sortable' => 1,
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+ 'separator' => '',
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+ ),
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+ 'urlprefix' => array(
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+ 'sortable' => 0,
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+ 'separator' => '',
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+ ),
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+ 'description' => array(
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+ 'sortable' => 0,
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+ 'separator' => '',
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+ ),
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+ ),
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+ 'default' => 'name',
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+ ));
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+ $handler = $view->new_display('page', 'Page', 'page_1');
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+ $handler->override_option('path', 'admin/tripal/tripal_db/list_dbxrefs ');
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+ $handler->override_option('menu', array(
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+ 'type' => 'normal',
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+ 'title' => 'DB Listing',
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+ 'description' => 'Lists all databases available to create database references for.',
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+ 'weight' => '0',
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+ 'name' => 'navigation',
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+ ));
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+ $handler->override_option('tab_options', array(
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+ 'type' => 'none',
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+ 'title' => '',
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+ 'description' => '',
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+ 'weight' => 0,
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+ 'name' => 'navigation',
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+ ));
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+ $views[$view->name] = $view;
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+
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+ // Main dbxref default view
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$view = new view;
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$view->name = 'dbxref_listing';
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$view->description = 'A listing of all database references filtered by database';
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