13 years ago · c5d67e59c6
--- a/modules/base/tripal_feature/fasta_loader.php
+++ b/modules/base/tripal_feature/fasta_loader.php
--- a/modules/base/tripal_feature/gff_loader.php
+++ b/modules/base/tripal_feature/gff_loader.php
--- a/modules/base/tripal_feature/indexFeatures.php
+++ b/modules/base/tripal_feature/indexFeatures.php
--- a/modules/base/tripal_feature/syncFeatures.php
+++ b/modules/base/tripal_feature/syncFeatures.php
--- a/modules/base/tripal_feature/tripal_feature-db_references.inc
+++ b/modules/base/tripal_feature/tripal_feature-db_references.inc
--- a/modules/base/tripal_feature/tripal_feature-delete.inc
+++ b/modules/base/tripal_feature/tripal_feature-delete.inc
--- a/modules/base/tripal_feature/tripal_feature-properties.inc
+++ b/modules/base/tripal_feature/tripal_feature-properties.inc
--- a/modules/base/tripal_feature/tripal_feature-relationships.inc
+++ b/modules/base/tripal_feature/tripal_feature-relationships.inc
--- a/modules/base/tripal_feature/tripal_feature-secondary_tables.inc
+++ b/modules/base/tripal_feature/tripal_feature-secondary_tables.inc
--- a/modules/base/tripal_feature/tripal_feature.admin.inc
+++ b/modules/base/tripal_feature/tripal_feature.admin.inc
--- a/modules/base/tripal_feature/tripal_feature.api.inc
+++ b/modules/base/tripal_feature/tripal_feature.api.inc
--- a/modules/base/tripal_feature/tripal_feature.info
+++ b/modules/base/tripal_feature/tripal_feature.info
--- a/modules/base/tripal_feature/tripal_feature.install
+++ b/modules/base/tripal_feature/tripal_feature.install
--- a/modules/base/tripal_feature/tripal_feature.module
+++ b/modules/base/tripal_feature/tripal_feature.module
--- a/modules/base/tripal_feature/tripal_feature.views.inc
+++ b/modules/base/tripal_feature/tripal_feature.views.inc
--- a/modules/base/tripal_feature/views/README
+++ b/modules/base/tripal_feature/views/README
--- a/modules/base/tripal_feature/views/chado_feature.views.inc
+++ b/modules/base/tripal_feature/views/chado_feature.views.inc
--- a/modules/base/tripal_feature/views/feature.views.inc
+++ b/modules/base/tripal_feature/views/feature.views.inc
--- a/modules/base/tripal_feature/views/handlers/views_handler_field_computed_feature_nid.inc
+++ b/modules/base/tripal_feature/views/handlers/views_handler_field_computed_feature_nid.inc
--- a/modules/base/tripal_feature/views/handlers/views_handler_field_readable_date.inc
+++ b/modules/base/tripal_feature/views/handlers/views_handler_field_readable_date.inc
--- a/modules/base/tripal_feature/views/handlers/views_handler_field_residues.inc
+++ b/modules/base/tripal_feature/views/handlers/views_handler_field_residues.inc
--- a/modules/base/tripal_feature/views/misc_tables.views.inc
+++ b/modules/base/tripal_feature/views/misc_tables.views.inc
--- a/modules/base/tripal_feature/views/template.node_join.views.inc
+++ b/modules/base/tripal_feature/views/template.node_join.views.inc
--- a/modules/base/tripal_feature/views/template.table_defn.views.inc
+++ b/modules/base/tripal_feature/views/template.table_defn.views.inc
--- a/modules/base/tripal_genetic/tripal_genetic.api.inc
+++ b/modules/base/tripal_genetic/tripal_genetic.api.inc
--- a/modules/base/tripal_genetic/tripal_genetic.info
+++ b/modules/base/tripal_genetic/tripal_genetic.info
--- a/modules/base/tripal_genetic/tripal_genetic.module
+++ b/modules/base/tripal_genetic/tripal_genetic.module
--- a/modules/base/tripal_genetic/tripal_genetic.views.inc
+++ b/modules/base/tripal_genetic/tripal_genetic.views.inc
--- a/modules/base/tripal_genetic/views/README
+++ b/modules/base/tripal_genetic/views/README
--- a/modules/base/tripal_genetic/views/genotype.views.inc
+++ b/modules/base/tripal_genetic/views/genotype.views.inc
--- a/modules/base/tripal_genetic/views/template.node_join.views.inc
+++ b/modules/base/tripal_genetic/views/template.node_join.views.inc
--- a/modules/base/tripal_genetic/views/template.table_defn.views.inc
+++ b/modules/base/tripal_genetic/views/template.table_defn.views.inc
--- a/modules/base/tripal_organism/tripal_organism.api.inc
+++ b/modules/base/tripal_organism/tripal_organism.api.inc
--- a/modules/base/tripal_organism/tripal_organism.info
+++ b/modules/base/tripal_organism/tripal_organism.info
--- a/modules/base/tripal_organism/tripal_organism.install
+++ b/modules/base/tripal_organism/tripal_organism.install
--- a/modules/base/tripal_organism/tripal_organism.module
+++ b/modules/base/tripal_organism/tripal_organism.module
--- a/modules/base/tripal_organism/tripal_organism.views.inc
+++ b/modules/base/tripal_organism/tripal_organism.views.inc
--- a/modules/base/tripal_organism/views/README
+++ b/modules/base/tripal_organism/views/README
--- a/modules/base/tripal_organism/views/chado_organism.views.inc
+++ b/modules/base/tripal_organism/views/chado_organism.views.inc
--- a/modules/base/tripal_organism/views/handlers/views_handler_field_computed_organism_nid.inc
+++ b/modules/base/tripal_organism/views/handlers/views_handler_field_computed_organism_nid.inc
--- a/modules/base/tripal_organism/views/handlers/views_handler_filter_organism_common_name.inc
+++ b/modules/base/tripal_organism/views/handlers/views_handler_filter_organism_common_name.inc
--- a/modules/base/tripal_organism/views/organism.views.inc
+++ b/modules/base/tripal_organism/views/organism.views.inc
--- a/modules/base/tripal_organism/views/template.node_join.views.inc
+++ b/modules/base/tripal_organism/views/template.node_join.views.inc
--- a/modules/base/tripal_organism/views/template.table_defn.views.inc
+++ b/modules/base/tripal_organism/views/template.table_defn.views.inc
--- a/modules/base/tripal_phenotype/tripal_phenotype.info
+++ b/modules/base/tripal_phenotype/tripal_phenotype.info
--- a/modules/base/tripal_phenotype/tripal_phenotype.module
+++ b/modules/base/tripal_phenotype/tripal_phenotype.module
--- a/modules/base/tripal_phenotype/tripal_phenotype.views.inc
+++ b/modules/base/tripal_phenotype/tripal_phenotype.views.inc
--- a/modules/base/tripal_phenotype/views/README
+++ b/modules/base/tripal_phenotype/views/README
--- a/modules/base/tripal_phenotype/views/template.node_join.views.inc
+++ b/modules/base/tripal_phenotype/views/template.node_join.views.inc
--- a/modules/base/tripal_phenotype/views/template.table_defn.views.inc
+++ b/modules/base/tripal_phenotype/views/template.table_defn.views.inc
--- a/modules/base/tripal_pub/tripal_pub.info
+++ b/modules/base/tripal_pub/tripal_pub.info
--- a/modules/base/tripal_pub/tripal_pub.install
+++ b/modules/base/tripal_pub/tripal_pub.install
--- a/modules/base/tripal_pub/tripal_pub.module
+++ b/modules/base/tripal_pub/tripal_pub.module
--- a/modules/base/tripal_pub/tripal_pub.views.inc
+++ b/modules/base/tripal_pub/tripal_pub.views.inc
--- a/modules/base/tripal_pub/views/README
+++ b/modules/base/tripal_pub/views/README
--- a/modules/base/tripal_pub/views/template.node_join.views.inc
+++ b/modules/base/tripal_pub/views/template.node_join.views.inc
--- a/modules/base/tripal_pub/views/template.table_defn.views.inc
+++ b/modules/base/tripal_pub/views/template.table_defn.views.inc
--- a/modules/base/tripal_search/tripal_search.info
+++ b/modules/base/tripal_search/tripal_search.info
--- a/modules/base/tripal_search/tripal_search.module
+++ b/modules/base/tripal_search/tripal_search.module
--- a/modules/base/tripal_stock/LISENCE.txt
+++ b/modules/base/tripal_stock/LISENCE.txt
--- a/modules/base/tripal_stock/other_module_api_functions.inc
+++ b/modules/base/tripal_stock/other_module_api_functions.inc
--- a/modules/base/tripal_stock/tripal_stock-administration.inc
+++ b/modules/base/tripal_stock/tripal_stock-administration.inc
--- a/modules/base/tripal_stock/tripal_stock-db_references.inc
+++ b/modules/base/tripal_stock/tripal_stock-db_references.inc
--- a/modules/base/tripal_stock/tripal_stock-properties.inc
+++ b/modules/base/tripal_stock/tripal_stock-properties.inc
--- a/modules/base/tripal_stock/tripal_stock-relationships.inc
+++ b/modules/base/tripal_stock/tripal_stock-relationships.inc
--- a/modules/base/tripal_stock/tripal_stock-secondary_tables.inc
+++ b/modules/base/tripal_stock/tripal_stock-secondary_tables.inc
--- a/modules/base/tripal_stock/tripal_stock.api.inc
+++ b/modules/base/tripal_stock/tripal_stock.api.inc
--- a/modules/base/tripal_stock/tripal_stock.info
+++ b/modules/base/tripal_stock/tripal_stock.info
--- a/modules/base/tripal_stock/tripal_stock.install
+++ b/modules/base/tripal_stock/tripal_stock.install
--- a/modules/base/tripal_stock/tripal_stock.module
+++ b/modules/base/tripal_stock/tripal_stock.module
--- a/modules/base/tripal_stock/tripal_stock.views.inc
+++ b/modules/base/tripal_stock/tripal_stock.views.inc
--- a/modules/base/tripal_stock/views/README
+++ b/modules/base/tripal_stock/views/README
--- a/modules/base/tripal_stock/views/chado_stock.views.inc
+++ b/modules/base/tripal_stock/views/chado_stock.views.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_argument_stockprop_id.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_argument_stockprop_id.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_field_computed_stock_nid.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_field_computed_stock_nid.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_field_stock_dbxref_all.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_field_stock_dbxref_all.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_field_stock_dbxref_by_type.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_field_stock_dbxref_by_type.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_field_stockprop_all.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_field_stockprop_all.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_field_stockprop_by_type.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_field_stockprop_by_type.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_field_stockrel_all.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_field_stockrel_all.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_field_stockrel_by_type.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_field_stockrel_by_type.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_filter_stock_dbxref_id.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_filter_stock_dbxref_id.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_filter_stock_relationship_id.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_filter_stock_relationship_id.inc
--- a/modules/base/tripal_stock/views/handlers/views_handler_filter_stockprop_id.inc
+++ b/modules/base/tripal_stock/views/handlers/views_handler_filter_stockprop_id.inc
--- a/modules/base/tripal_stock/views/misc_tables.views.inc
+++ b/modules/base/tripal_stock/views/misc_tables.views.inc
--- a/modules/base/tripal_stock/views/stock.views.inc
+++ b/modules/base/tripal_stock/views/stock.views.inc
--- a/modules/base/tripal_stock/views/template.node_join.views.inc
+++ b/modules/base/tripal_stock/views/template.node_join.views.inc
--- a/modules/base/tripal_stock/views/template.table_defn.views.inc
+++ b/modules/base/tripal_stock/views/template.table_defn.views.inc
--- a/modules/extensions/tripal_search_unigene/tripal_search_unigene.info
+++ b/modules/extensions/tripal_search_unigene/tripal_search_unigene.info
--- a/modules/extensions/tripal_search_unigene/tripal_search_unigene.install
+++ b/modules/extensions/tripal_search_unigene/tripal_search_unigene.install
--- a/modules/extensions/tripal_search_unigene/tripal_search_unigene.module
+++ b/modules/extensions/tripal_search_unigene/tripal_search_unigene.module
--- a/modules/extensions/tripal_search_unigene/tripal_search_unigene.views.inc
+++ b/modules/extensions/tripal_search_unigene/tripal_search_unigene.views.inc
--- a/modules/extensions/tripal_search_unigene/views_handler_filter_analysis_name.inc
+++ b/modules/extensions/tripal_search_unigene/views_handler_filter_analysis_name.inc
--- a/modules/extensions/tripal_search_unigene/views_handler_filter_feature_type_id.inc
+++ b/modules/extensions/tripal_search_unigene/views_handler_filter_feature_type_id.inc
--- a/modules/extensions/tripal_search_unigene/views_handler_filter_organism_common_name.inc
+++ b/modules/extensions/tripal_search_unigene/views_handler_filter_organism_common_name.inc