add GOSlim OBO importer test

tests/tripal_chado/loaders/OBOImporterTest.php

@@ -0,0 +1,99 @@
+<?php
+
+namespace Tests;
+
+use StatonLab\TripalTestSuite\DBTransaction;
+use StatonLab\TripalTestSuite\TripalTestCase;
+
+class OBOImporterTest extends TripalTestCase {
+
+  // Uncomment to auto start and rollback db transactions per test method.
+  use DBTransaction;
+
+
+  //  /**
+  //   * @group obo
+  //   */
+  //  public function test_PTO_loads() {
+  //    $this->load_pto_full();
+  //
+  //    $exists = db_select('chado.cv', 'c')
+  //      ->fields('c', ['cv_id'])
+  //      ->condition('name', 'plaint_trait_ontology');
+  //    $this->assertNotNull($exists);
+  //
+  //  }
+
+  /**
+   * @group obo
+   */
+
+  public function testGO_SLIM_loads() {
+    $this->load_goslim_plant();
+
+    $exists = db_select('chado.cv', 'c')
+      ->fields('c', ['cv_id'])
+      ->condition('name', 'core_test_goslim_plant')
+      ->execute()
+      ->fetchField();
+    $this->assertNotNull($exists);
+
+
+  }
+
+  private function load_pto_full() {
+
+    $name = 'core_test_PTO_mini';
+    $path = 'http://purl.obolibrary.org/obo/to.obo';
+
+    $obo_id = db_select('public.tripal_cv_obo', 't')
+      ->fields('t', ['obo_id'])
+      ->condition('t.name', $name)->execute()->fetchField();
+
+    if (!$obo_id) {
+
+      $obo_id = db_insert('public.tripal_cv_obo')
+        ->fields(['name' => $name, 'path' => $path])
+        ->execute();
+
+    }
+
+    $run_args = ['obo_id' => $obo_id];
+
+    module_load_include('inc', 'tripal_chado', 'includes/TripalImporter/OBOImporter');
+    $importer = new \OBOImporter();
+    $importer->create($run_args);
+    $importer->prepareFiles();
+    $importer->run();
+
+  }
+
+  private function load_goslim_plant() {
+
+    $name = 'core_test_goslim_plant';
+    $path = 'http://www.geneontology.org/ontology/subsets/goslim_plant.obo';
+
+    $obo_id = db_select('public.tripal_cv_obo', 't')
+      ->fields('t', ['obo_id'])
+      ->condition('t.name', $name)
+      ->execute()
+      ->fetchField();
+
+    if (!$obo_id) {
+
+      $obo_id = db_insert('public.tripal_cv_obo')
+        ->fields(['name' => $name, 'path' => $path])
+        ->execute();
+    }
+
+    $run_args = ['obo_id' => $obo_id];
+
+    module_load_include('inc', 'tripal_chado', 'includes/TripalImporter/OBOImporter');
+    $importer = new \OBOImporter();
+    $importer->create($run_args);
+    $importer->prepareFiles();
+    $importer->run();
+
+  }
+
+}