|  | @@ -180,3 +180,380 @@ function tripal_stock_views_pre_render	(&$view) {
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				|  |  |  		} //if there are stocks
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				|  |  |  	} //if we're dealing with a stock view
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				|  |  |  }
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				|  |  | +
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				|  |  | +function tripal_stock_views_default_views() {
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				|  |  | +  $views = array();
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				|  |  | +  
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				|  |  | +$view = new view;
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				|  |  | +$view->name = 'all_stocks';
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				|  |  | +$view->description = 'This view lists all stocks by default. There are exposed filters available but no arguments are used.';
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				|  |  | +$view->tag = 'chado';
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				|  |  | +$view->view_php = '';
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				|  |  | +$view->base_table = 'stock';
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				|  |  | +$view->is_cacheable = FALSE;
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				|  |  | +$view->api_version = 2;
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				|  |  | +$view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
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				|  |  | +$handler = $view->new_display('default', 'Defaults', 'default');
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				|  |  | +$handler->override_option('fields', array(
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				|  |  | +  'uniquename' => array(
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				|  |  | +    'label' => 'Unique Name',
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				|  |  | +    'alter' => array(
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				|  |  | +      'alter_text' => 0,
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				|  |  | +      'text' => '',
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				|  |  | +      'make_link' => 0,
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				|  |  | +      'path' => '',
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				|  |  | +      'link_class' => '',
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				|  |  | +      'alt' => '',
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				|  |  | +      'prefix' => '',
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				|  |  | +      'suffix' => '',
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				|  |  | +      'target' => '',
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				|  |  | +      'help' => '',
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				|  |  | +      'trim' => 0,
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				|  |  | +      'max_length' => '',
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				|  |  | +      'word_boundary' => 1,
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				|  |  | +      'ellipsis' => 1,
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				|  |  | +      'html' => 0,
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				|  |  | +      'strip_tags' => 0,
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				|  |  | +    ),
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				|  |  | +    'empty' => '',
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				|  |  | +    'hide_empty' => 0,
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				|  |  | +    'empty_zero' => 0,
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				|  |  | +    'link_to_node' => 1,
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				|  |  | +    'exclude' => 0,
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				|  |  | +    'id' => 'uniquename',
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				|  |  | +    'table' => 'stock',
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				|  |  | +    'field' => 'uniquename',
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				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
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				|  |  | +  'name_2' => array(
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				|  |  | +    'label' => 'Name',
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				|  |  | +    'alter' => array(
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				|  |  | +      'alter_text' => 0,
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				|  |  | +      'text' => '',
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				|  |  | +      'make_link' => 0,
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				|  |  | +      'path' => '',
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				|  |  | +      'link_class' => '',
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				|  |  | +      'alt' => '',
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				|  |  | +      'prefix' => '',
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				|  |  | +      'suffix' => '',
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				|  |  | +      'target' => '',
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				|  |  | +      'help' => '',
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				|  |  | +      'trim' => 0,
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				|  |  | +      'max_length' => '',
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				|  |  | +      'word_boundary' => 1,
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				|  |  | +      'ellipsis' => 1,
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				|  |  | +      'html' => 0,
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				|  |  | +      'strip_tags' => 0,
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				|  |  | +    ),
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				|  |  | +    'empty' => '',
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				|  |  | +    'hide_empty' => 0,
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				|  |  | +    'empty_zero' => 0,
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				|  |  | +    'link_to_node' => 1,
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				|  |  | +    'exclude' => 0,
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				|  |  | +    'id' => 'name_2',
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				|  |  | +    'table' => 'stock',
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				|  |  | +    'field' => 'name',
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				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
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				|  |  | +  'name' => array(
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				|  |  | +    'label' => 'Type',
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				|  |  | +    'alter' => array(
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				|  |  | +      'alter_text' => 0,
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				|  |  | +      'text' => '',
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				|  |  | +      'make_link' => 0,
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				|  |  | +      'path' => '',
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				|  |  | +      'link_class' => '',
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				|  |  | +      'alt' => '',
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				|  |  | +      'prefix' => '',
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				|  |  | +      'suffix' => '',
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				|  |  | +      'target' => '',
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				|  |  | +      'help' => '',
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				|  |  | +      'trim' => 0,
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				|  |  | +      'max_length' => '',
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				|  |  | +      'word_boundary' => 1,
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				|  |  | +      'ellipsis' => 1,
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				|  |  | +      'html' => 0,
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				|  |  | +      'strip_tags' => 0,
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				|  |  | +    ),
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				|  |  | +    'empty' => '',
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				|  |  | +    'hide_empty' => 0,
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				|  |  | +    'empty_zero' => 0,
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				|  |  | +    'exclude' => 0,
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				|  |  | +    'id' => 'name',
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				|  |  | +    'table' => 'cvterm',
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				|  |  | +    'field' => 'name',
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				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
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				|  |  | +  'common_name' => array(
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				|  |  | +    'label' => 'Organism',
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				|  |  | +    'alter' => array(
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				|  |  | +      'alter_text' => 0,
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				|  |  | +      'text' => '',
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				|  |  | +      'make_link' => 0,
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				|  |  | +      'path' => '',
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				|  |  | +      'link_class' => '',
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				|  |  | +      'alt' => '',
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				|  |  | +      'prefix' => '',
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				|  |  | +      'suffix' => '',
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				|  |  | +      'target' => '',
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				|  |  | +      'help' => '',
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				|  |  | +      'trim' => 0,
 | 
	
		
			
				|  |  | +      'max_length' => '',
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				|  |  | +      'word_boundary' => 1,
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				|  |  | +      'ellipsis' => 1,
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				|  |  | +      'html' => 0,
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				|  |  | +      'strip_tags' => 0,
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				|  |  | +    ),
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				|  |  | +    'empty' => '',
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				|  |  | +    'hide_empty' => 0,
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				|  |  | +    'empty_zero' => 0,
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				|  |  | +    'link_to_node' => 1,
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				|  |  | +    'exclude' => 0,
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				|  |  | +    'id' => 'common_name',
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				|  |  | +    'table' => 'organism',
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				|  |  | +    'field' => 'common_name',
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				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
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				|  |  | +  'all_dbxref' => array(
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				|  |  | +    'label' => 'All Database References',
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				|  |  | +    'alter' => array(
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				|  |  | +      'alter_text' => 0,
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				|  |  | +      'text' => '',
 | 
	
		
			
				|  |  | +      'make_link' => 0,
 | 
	
		
			
				|  |  | +      'path' => '',
 | 
	
		
			
				|  |  | +      'link_class' => '',
 | 
	
		
			
				|  |  | +      'alt' => '',
 | 
	
		
			
				|  |  | +      'prefix' => '',
 | 
	
		
			
				|  |  | +      'suffix' => '',
 | 
	
		
			
				|  |  | +      'target' => '',
 | 
	
		
			
				|  |  | +      'help' => '',
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				|  |  | +      'trim' => 0,
 | 
	
		
			
				|  |  | +      'max_length' => '',
 | 
	
		
			
				|  |  | +      'word_boundary' => 1,
 | 
	
		
			
				|  |  | +      'ellipsis' => 1,
 | 
	
		
			
				|  |  | +      'html' => 0,
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				|  |  | +      'strip_tags' => 0,
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				|  |  | +    ),
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				|  |  | +    'empty' => '',
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				|  |  | +    'hide_empty' => 0,
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				|  |  | +    'empty_zero' => 0,
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				|  |  | +    'type' => 'ul',
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				|  |  | +    'separator' => ', ',
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				|  |  | +    'exclude' => 0,
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				|  |  | +    'id' => 'all_dbxref',
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				|  |  | +    'table' => 'stock',
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				|  |  | +    'field' => 'all_dbxref',
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				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
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				|  |  | +  'all_properties' => array(
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				|  |  | +    'label' => 'All Properties',
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				|  |  | +    'alter' => array(
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				|  |  | +      'alter_text' => 0,
 | 
	
		
			
				|  |  | +      'text' => '',
 | 
	
		
			
				|  |  | +      'make_link' => 0,
 | 
	
		
			
				|  |  | +      'path' => '',
 | 
	
		
			
				|  |  | +      'link_class' => '',
 | 
	
		
			
				|  |  | +      'alt' => '',
 | 
	
		
			
				|  |  | +      'prefix' => '',
 | 
	
		
			
				|  |  | +      'suffix' => '',
 | 
	
		
			
				|  |  | +      'target' => '',
 | 
	
		
			
				|  |  | +      'help' => '',
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				|  |  | +      'trim' => 0,
 | 
	
		
			
				|  |  | +      'max_length' => '',
 | 
	
		
			
				|  |  | +      'word_boundary' => 1,
 | 
	
		
			
				|  |  | +      'ellipsis' => 1,
 | 
	
		
			
				|  |  | +      'html' => 0,
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				|  |  | +      'strip_tags' => 0,
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				|  |  | +    ),
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				|  |  | +    'empty' => '',
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				|  |  | +    'hide_empty' => 0,
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				|  |  | +    'empty_zero' => 0,
 | 
	
		
			
				|  |  | +    'type' => 'ul',
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				|  |  | +    'separator' => ', ',
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				|  |  | +    'exclude' => 0,
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				|  |  | +    'id' => 'all_properties',
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				|  |  | +    'table' => 'stock',
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				|  |  | +    'field' => 'all_properties',
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				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
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				|  |  | +  'all_relationships' => array(
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				|  |  | +    'label' => 'All Relationships',
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				|  |  | +    'alter' => array(
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				|  |  | +      'alter_text' => 0,
 | 
	
		
			
				|  |  | +      'text' => '',
 | 
	
		
			
				|  |  | +      'make_link' => 0,
 | 
	
		
			
				|  |  | +      'path' => '',
 | 
	
		
			
				|  |  | +      'link_class' => '',
 | 
	
		
			
				|  |  | +      'alt' => '',
 | 
	
		
			
				|  |  | +      'prefix' => '',
 | 
	
		
			
				|  |  | +      'suffix' => '',
 | 
	
		
			
				|  |  | +      'target' => '',
 | 
	
		
			
				|  |  | +      'help' => '',
 | 
	
		
			
				|  |  | +      'trim' => 0,
 | 
	
		
			
				|  |  | +      'max_length' => '',
 | 
	
		
			
				|  |  | +      'word_boundary' => 1,
 | 
	
		
			
				|  |  | +      'ellipsis' => 1,
 | 
	
		
			
				|  |  | +      'html' => 0,
 | 
	
		
			
				|  |  | +      'strip_tags' => 0,
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				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'empty' => '',
 | 
	
		
			
				|  |  | +    'hide_empty' => 0,
 | 
	
		
			
				|  |  | +    'empty_zero' => 0,
 | 
	
		
			
				|  |  | +    'type' => 'ul',
 | 
	
		
			
				|  |  | +    'separator' => ', ',
 | 
	
		
			
				|  |  | +    'exclude' => 0,
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				|  |  | +    'id' => 'all_relationships',
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				|  |  | +    'table' => 'stock',
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				|  |  | +    'field' => 'all_relationships',
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				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
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				|  |  | +));
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				|  |  | +$handler->override_option('sorts', array(
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				|  |  | +  'common_name' => array(
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				|  |  | +    'order' => 'ASC',
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				|  |  | +    'id' => 'common_name',
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				|  |  | +    'table' => 'organism',
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				|  |  | +    'field' => 'common_name',
 | 
	
		
			
				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
 | 
	
		
			
				|  |  | +  'uniquename' => array(
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				|  |  | +    'order' => 'ASC',
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				|  |  | +    'id' => 'uniquename',
 | 
	
		
			
				|  |  | +    'table' => 'stock',
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				|  |  | +    'field' => 'uniquename',
 | 
	
		
			
				|  |  | +    'relationship' => 'none',
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				|  |  | +  ),
 | 
	
		
			
				|  |  | +));
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				|  |  | +$handler->override_option('filters', array(
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				|  |  | +  'common_name' => array(
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				|  |  | +    'operator' => '=',
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				|  |  | +    'value' => 'All',
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				|  |  | +    'group' => '0',
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				|  |  | +    'exposed' => TRUE,
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				|  |  | +    'expose' => array(
 | 
	
		
			
				|  |  | +      'use_operator' => 0,
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				|  |  | +      'operator' => 'common_name_op',
 | 
	
		
			
				|  |  | +      'identifier' => 'organism_common_name',
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				|  |  | +      'label' => 'Organism',
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				|  |  | +      'optional' => 1,
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				|  |  | +      'remember' => 0,
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				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'case' => 1,
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				|  |  | +    'id' => 'common_name',
 | 
	
		
			
				|  |  | +    'table' => 'organism',
 | 
	
		
			
				|  |  | +    'field' => 'common_name',
 | 
	
		
			
				|  |  | +    'relationship' => 'none',
 | 
	
		
			
				|  |  | +  ),
 | 
	
		
			
				|  |  | +  'name' => array(
 | 
	
		
			
				|  |  | +    'operator' => '=',
 | 
	
		
			
				|  |  | +    'value' => 'All',
 | 
	
		
			
				|  |  | +    'group' => '0',
 | 
	
		
			
				|  |  | +    'exposed' => TRUE,
 | 
	
		
			
				|  |  | +    'expose' => array(
 | 
	
		
			
				|  |  | +      'use_operator' => 0,
 | 
	
		
			
				|  |  | +      'operator' => 'name_op',
 | 
	
		
			
				|  |  | +      'identifier' => 'name',
 | 
	
		
			
				|  |  | +      'label' => 'Chado CV Terms: Name',
 | 
	
		
			
				|  |  | +      'optional' => 1,
 | 
	
		
			
				|  |  | +      'remember' => 0,
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'case' => 1,
 | 
	
		
			
				|  |  | +    'id' => 'name',
 | 
	
		
			
				|  |  | +    'table' => 'cvterm',
 | 
	
		
			
				|  |  | +    'field' => 'name',
 | 
	
		
			
				|  |  | +    'relationship' => 'none',
 | 
	
		
			
				|  |  | +  ),
 | 
	
		
			
				|  |  | +  'status' => array(
 | 
	
		
			
				|  |  | +    'operator' => '=',
 | 
	
		
			
				|  |  | +    'value' => '1',
 | 
	
		
			
				|  |  | +    'group' => '0',
 | 
	
		
			
				|  |  | +    'exposed' => FALSE,
 | 
	
		
			
				|  |  | +    'expose' => array(
 | 
	
		
			
				|  |  | +      'operator' => FALSE,
 | 
	
		
			
				|  |  | +      'label' => '',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'id' => 'status',
 | 
	
		
			
				|  |  | +    'table' => 'node',
 | 
	
		
			
				|  |  | +    'field' => 'status',
 | 
	
		
			
				|  |  | +    'override' => array(
 | 
	
		
			
				|  |  | +      'button' => 'Override',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'relationship' => 'none',
 | 
	
		
			
				|  |  | +  ),
 | 
	
		
			
				|  |  | +));
 | 
	
		
			
				|  |  | +$handler->override_option('access', array(
 | 
	
		
			
				|  |  | +  'type' => 'perm',
 | 
	
		
			
				|  |  | +  'perm' => 'access chado_stock content',
 | 
	
		
			
				|  |  | +));
 | 
	
		
			
				|  |  | +$handler->override_option('cache', array(
 | 
	
		
			
				|  |  | +  'type' => 'none',
 | 
	
		
			
				|  |  | +));
 | 
	
		
			
				|  |  | +$handler->override_option('title', 'Stocks');
 | 
	
		
			
				|  |  | +$handler->override_option('empty', 'There are no stocks that match this criteria. If you think there should be, ensure that all stocks in chado are sync\'d with your website.');
 | 
	
		
			
				|  |  | +$handler->override_option('empty_format', '1');
 | 
	
		
			
				|  |  | +$handler->override_option('items_per_page', 25);
 | 
	
		
			
				|  |  | +$handler->override_option('use_pager', '1');
 | 
	
		
			
				|  |  | +$handler->override_option('style_plugin', 'table');
 | 
	
		
			
				|  |  | +$handler->override_option('style_options', array(
 | 
	
		
			
				|  |  | +  'grouping' => '',
 | 
	
		
			
				|  |  | +  'override' => 1,
 | 
	
		
			
				|  |  | +  'sticky' => 0,
 | 
	
		
			
				|  |  | +  'order' => 'asc',
 | 
	
		
			
				|  |  | +  'columns' => array(
 | 
	
		
			
				|  |  | +    'uniquename' => 'uniquename',
 | 
	
		
			
				|  |  | +    'name_2' => 'name_2',
 | 
	
		
			
				|  |  | +    'name' => 'name',
 | 
	
		
			
				|  |  | +    'common_name' => 'common_name',
 | 
	
		
			
				|  |  | +    'all_dbxref' => 'all_dbxref',
 | 
	
		
			
				|  |  | +    'all_properties' => 'all_properties',
 | 
	
		
			
				|  |  | +    'all_relationships' => 'all_relationships',
 | 
	
		
			
				|  |  | +  ),
 | 
	
		
			
				|  |  | +  'info' => array(
 | 
	
		
			
				|  |  | +    'uniquename' => array(
 | 
	
		
			
				|  |  | +      'sortable' => 1,
 | 
	
		
			
				|  |  | +      'separator' => '',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'name_2' => array(
 | 
	
		
			
				|  |  | +      'sortable' => 1,
 | 
	
		
			
				|  |  | +      'separator' => '',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'name' => array(
 | 
	
		
			
				|  |  | +      'sortable' => 1,
 | 
	
		
			
				|  |  | +      'separator' => '',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'common_name' => array(
 | 
	
		
			
				|  |  | +      'sortable' => 1,
 | 
	
		
			
				|  |  | +      'separator' => '',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'all_dbxref' => array(
 | 
	
		
			
				|  |  | +      'separator' => '',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'all_properties' => array(
 | 
	
		
			
				|  |  | +      'separator' => '',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +    'all_relationships' => array(
 | 
	
		
			
				|  |  | +      'separator' => '',
 | 
	
		
			
				|  |  | +    ),
 | 
	
		
			
				|  |  | +  ),
 | 
	
		
			
				|  |  | +  'default' => '-1',
 | 
	
		
			
				|  |  | +));
 | 
	
		
			
				|  |  | +$handler = $view->new_display('page', 'Page', 'page_1');
 | 
	
		
			
				|  |  | +$handler->override_option('path', 'stocks');
 | 
	
		
			
				|  |  | +$handler->override_option('menu', array(
 | 
	
		
			
				|  |  | +  'type' => 'normal',
 | 
	
		
			
				|  |  | +  'title' => 'Stocks',
 | 
	
		
			
				|  |  | +  'description' => 'A full listing of all chado stocks',
 | 
	
		
			
				|  |  | +  'weight' => '0',
 | 
	
		
			
				|  |  | +  'name' => 'primary-links',
 | 
	
		
			
				|  |  | +));
 | 
	
		
			
				|  |  | +$handler->override_option('tab_options', array(
 | 
	
		
			
				|  |  | +  'type' => 'none',
 | 
	
		
			
				|  |  | +  'title' => '',
 | 
	
		
			
				|  |  | +  'description' => '',
 | 
	
		
			
				|  |  | +  'weight' => 0,
 | 
	
		
			
				|  |  | +  'name' => 'navigation',
 | 
	
		
			
				|  |  | +));
 | 
	
		
			
				|  |  | +$views[$view->name] = $view;  
 | 
	
		
			
				|  |  | +  
 | 
	
		
			
				|  |  | +  return $views;
 | 
	
		
			
				|  |  | +}
 |